Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034T)

被引：67

作者：

Del Rio, Tijana Glavina ^{[2
]}

Abt, Birte ^{[1
]}

Spring, Stefan ^{[1
]}

Lapidus, Alla ^{[2
]}

Nolan, Matt ^{[2
]}

Tice, Hope ^{[2
]}

Copeland, Alex ^{[2
]}

Cheng, Jan-Fang ^{[2
]}

Chen, Feng ^{[2
]}

Bruce, David ^{[2
,3
]}

Goodwin, Lynne ^{[2
,3
]}

Pitluck, Sam ^{[2
]}

Ivanova, Natalia ^{[2
]}

Mavromatis, Konstantinos ^{[2
]}

Mikhailova, Natalia ^{[2
]}

Pati, Amrita ^{[2
]}

Chen, Amy ^{[4
]}

Palaniappan, Krishna ^{[4
]}

Land, Miriam ^{[2
,5
]}

Hauser, Loren ^{[2
,5
]}

Chang, Yun-Juan ^{[2
,5
]}

Jeffries, Cynthia D. ^{[2
,5
]}

Chain, Patrick ^{[1
,3
]}

Saunders, Elizabeth ^{[3
]}

Detter, John C. ^{[2
,3
]}

Brettin, Thomas ^{[2
,3
]}

Rohde, Manfred ^{[6
]}

Goeker, Markus ^{[1
]}

Bristow, Jim ^{[2
]}

Eisen, Jonathan A. ^{[2
,7
]}

Markowitz, Victor ^{[4
]}

Hugenholtz, Philip ^{[2
]}

Kyrpides, Nikos C. ^{[2
]}

Klenk, Hans-Peter ^{[1
]}

Lucas, Susan ^{[2
]}

机构：

[1] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany

[2] DOE Joint Genome Inst, Walnut Creek, CA USA

[3] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA

[4] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA

[5] Oak Ridge Natl Lab, Oak Ridge, TN USA

[6] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany

[7] Univ Calif Davis Genome Ctr, Davis, CA USA

来源：

STANDARDS IN GENOMIC SCIENCES | 2010年 / 2卷 / 01期

关键词：

filamentous; gliding; myxospores; aerobic; mesophile; Gram-negative; biomass degrader; chitinolytic; 'Chitinophagaceae'; GEBA; SP-NOV; SOIL; BACTERIA; ARCHAEA; SYSTEM; GENUS;

D O I：

10.4056/sigs.661199

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Chitinophaga pinensis Sangkhobol and Skerman 1981 is the type strain of the species which is the type species of the rapidly growing genus Chitinophaga in the sphingobacterial family 'Chitinophagaceae'. Members of the genus Chitinophaga vary in shape between filaments and spherical bodies without the production of a fruiting body, produce myxospores, and are of special interest for their ability to degrade chitin. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the family 'Chitinophagaceae', and the 9,127,347 bp long single replicon genome with its 7,397 protein-coding and 95 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

引用

页码：87 / 95

页数：9

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