Nucleic Acids Analytical Methods for Viral Infection Diagnosis: State-of-the-Art and Future Perspectives

被引:15
作者
Sciuto, Emanuele Luigi [1 ]
Leonardi, Antonio Alessio [2 ,3 ]
Calabrese, Giovanna [3 ]
De Luca, Giovanna [3 ]
Coniglio, Maria Anna [4 ]
Irrera, Alessia [2 ,3 ]
Conoci, Sabrina [2 ,3 ,5 ]
机构
[1] Univ Policlin G Rodolico San Marco, Azienda Osped, Via Santa Sofia 78, I-95123 Catania, Italy
[2] CNR IPCF, Ist & Processi Chim Fis, Viale F Stagno DAlcontres 37, I-98158 Messina, Italy
[3] Univ Messina, Dept Chem Biol Pharmaceut & Environm Sci, Viale Ferdinando Stagno dAlcontres 5, I-98166 Messina, Italy
[4] Univ Catania, Dept Med & Surg Sci & Adv Technol GF Ingrassia, Via Sofia 87, I-95123 Catania, Italy
[5] Consiglio Nazl Ric CNR IMM, Ist Microelettron & Microsistemi, Ottava Str 5, I-95121 Catania, Italy
关键词
infections diagnosis; viral NA analysis; point-of-care; silicon-based technologies; microfluidics; ISOTHERMAL AMPLIFICATION; VIRUS DETECTION; DNA; EXTRACTION; PCR; POINT; CHIP; TECHNOLOGIES; URINE; LAMP;
D O I
10.3390/biom11111585
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The analysis of viral nucleic acids (NA), DNA or RNA, is a crucial issue in the diagnosis of infections and the treatment and prevention of related human diseases. Conventional nucleic acid tests (NATs) require multistep approaches starting from the purification of the pathogen genetic material in biological samples to the end of its detection, basically performed by the consolidated polymerase chain reaction (PCR), by the use of specialized instruments and dedicated laboratories. However, since the current NATs are too constraining and time and cost consuming, the research is evolving towards more integrated, decentralized, user-friendly, and low-cost methods. These will allow the implementation of massive diagnoses addressing the growing demand of fast and accurate viral analysis facing such global alerts as the pandemic of coronavirus disease of the recent period. Silicon-based technology and microfluidics, in this sense, brought an important step up, leading to the introduction of the genetic point-of-care (PoC) systems. This review goes through the evolution of the analytical methods for the viral NA diagnosis of infection diseases, highlighting both advantages and drawbacks of the innovative emerging technologies versus the conventional approaches.
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页数:15
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共 70 条
[1]   Single-Step Recombinase Polymerase Amplification Assay Based on a Paper Chip for Simultaneous Detection of Multiple Foodborne Pathogens [J].
Ahn, Heeseop ;
Batule, Bhagwan Sahebrao ;
Seok, Youngung ;
Kim, Min-Gon .
ANALYTICAL CHEMISTRY, 2018, 90 (17) :10211-10216
[2]   Expanding the MDx toolbox for filarial diagnosis and surveillance [J].
Alhassan, Andy ;
Li, Zhiru ;
Poole, Catherine B. ;
Carlow, Clotilde K. S. .
TRENDS IN PARASITOLOGY, 2015, 31 (08) :391-400
[3]   Portable nucleic acid thermocyclers [J].
Almassian, David R. ;
Cockrell, Lisa M. ;
Nelson, William M. .
CHEMICAL SOCIETY REVIEWS, 2013, 42 (22) :8769-8798
[4]   Comparison of the FilmArray assay and in-house real-time PCR for detection of respiratory infection [J].
Andersson, Maria E. ;
Olofsson, Sigvard ;
Lindh, Magnus .
SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES, 2014, 46 (12) :897-901
[5]  
Battaglia S, 2019, ANALYST, V144, P2353, DOI [10.1039/c9an00006b, 10.1039/C9AN00006B]
[6]   The preparation of microfluidic architecture with monolithic materials using a dual porous silica structure [J].
Birch, Christopher ;
Esfahani, Mohammad Mehdi Nasr ;
Shaw, Kirsty J. ;
Kemp, Cordula ;
Haswell, Stephen James ;
Dyer, Charlotte .
ELECTROPHORESIS, 2017, 38 (22-23) :2996-3002
[7]   The GenePOC Platform, a Rational Solution for Extreme Point-of-Care Testing [J].
Bissonnette, Luc ;
Bergeron, Michel G. .
MICROMACHINES, 2016, 7 (06)
[8]  
Bizouarn F, 2014, METHODS MOL BIOL, V1160, P27, DOI 10.1007/978-1-4939-0733-5_4
[9]   Emerging Technologies for the Clinical Microbiology Laboratory [J].
Buchan, Blake W. ;
Ledeboer, Nathan A. .
CLINICAL MICROBIOLOGY REVIEWS, 2014, 27 (04) :783-822
[10]   Virus Detection: A Review of the Current and Emerging Molecular and Immunological Methods [J].
Cassedy, A. ;
Parle-McDermott, A. ;
O'Kennedy, R. .
FRONTIERS IN MOLECULAR BIOSCIENCES, 2021, 8