Complete genome sequence of Streptomyces peucetius ATCC 27952, the producer of anticancer anthracyclines and diverse secondary metabolites

被引:20
作者
Dhakal, Dipesh [1 ]
Lim, Si-Kyu [3 ]
Kim, Dae Hee [4 ]
Kim, Byung-Gee [5 ]
Yamaguchi, Tokutaro [2 ]
Sohng, Jae Kyung [1 ,2 ]
机构
[1] Sun Moon Univ, Dept Life Sci & Biochem Engn, 70 Sunmoon Ro 221, Asan 31460, Chungnam, South Korea
[2] Sun Moon Univ, Dept BT Convergent Pharmaceut Engn, 70 Sunmoon Ro 221, Asan 31460, Chungnam, South Korea
[3] GenoTech Corp, 26-69 Gajeongbuk Ro, Daejeon 34113, South Korea
[4] GeneChem Corp, 59-5 Jang Dong, Daejeon 34025, South Korea
[5] Seoul Natl Univ, Sch Chem & Biol Engn, 1 Gwanak Ro, Seoul 08826, South Korea
基金
新加坡国家研究基金会;
关键词
Streptomyces; Genome sequence; Gene cluster; Bioactive compounds; Enzymes; ESCHERICHIA-COLI; NATURAL-PRODUCTS; POLYKETIDE SYNTHASE; IN-SILICO; CYTOCHROME-P450; BIOTRANSFORMATION; DOXORUBICIN; PATHWAY; SYSTEM; IDENTIFICATION;
D O I
10.1016/j.jbiotec.2017.12.024
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Streptomyces peucetius ATCC 27952 is a filamentous soil bacterium with potential to produce anthracyclines such as doxorubicin (DXR) and daunorubicin (DNR), which are potent chemotherapeutic agents for the treatment of cancer. Here we present the complete genome sequence of S. peucetius ATCC 27952, which consists of 8,023,114 bp with a linear chromosome, 7187 protein-coding genes, 18 rRNA operons and 66 tRNAs. Bioinformatic analysis of the genome sequence revealed similar to 68 putative gene clusters involved in the biosynthesis of secondary metabolites, including diverse classes of natural products. Diverse secondary metabolites of PKS (polyketide synthase) type II (doxorubicin and daunorubicin), NRPS (non-ribosomal peptide synthase) (T1-pks), terpene (hopene) etc. have already been reported for this strain. In addition, in silico analysis suggests the potential to produce diverse compound classes such as lantipeptides, lassopeptides, NRPS and polyketides. Furthermore, many catalytically-efficient enzymes involved in hydroxylation, methylation etc. have been characterized in this strain. The availability of genomic information provides valuable insight for devising rational strategies for the production and isolation of diverse bioactive compounds as well as for the industrial application of efficient enzymes.
引用
收藏
页码:50 / 54
页数:5
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