In the study, the samples of goat milk, feed, soil and drinking water were firstly collected from nine farms of three provinces in China, the stable isotopic ratios (delta C-13, delta N-15, delta H-2 and delta O-18) in casein, lipid of milk, feed, and drinking water and the contents of 11 elements in milk and soil were determined. Statistical analysis indicated that except the content of Zn, other variables in milk showed significant differences among two or three regions. Significant correlations were found for delta C-13 between casein and lipid (r = 0.953, P < 0.05) and for delta H-2 between casein and milk water (r = 0.816, P < 0.05). The delta H-2 and delta O-18 in casein and milk water were identical to that in corresponding drinking water. Finally, seven key variables (delta N-15(casein), delta O-18(casein), Ni, Se, Rb, Sr and Ba) were selected by stepwise canonical discriminant analysis and the correct classification rate reached 100%.