Paenibacillus arenosi sp. nov., a siderophore-producing bacterium isolated from coastal sediment

被引:6
作者
Baek, Jihye [1 ]
Weerawongwiwat, Veeraya [1 ]
Kim, Jong-Hwa [1 ]
Yoon, Jung-Hoon [2 ]
Lee, Jung-Sook [3 ]
Sukhoom, Ampaitip [4 ]
Kim, Wonyong [1 ]
机构
[1] Chung Ang Univ, Dept Microbiol, Coll Med, Seoul 06974, South Korea
[2] Sungkyunkwan Univ, Dept Food Sci & Biotechnol, Suwon 16419, South Korea
[3] Korea Res Inst Biosci & Biotechnol, Korean Collect Type Cultures, Jeongeup 56216, South Korea
[4] Prince Songkla Univ, Div Biol Sci, Fac Sci, Hat Yai 90110, Songkhla, Thailand
关键词
Paenibacillus arenosi; Firmicutes; Bacillus; Sea sand; Whole-genome; Siderophore-producing bacteria; IDENTIFICATION; SOIL;
D O I
10.1007/s00203-021-02735-3
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
In this study, strain CAU 1523(T), a novel Gram-positive-positive bacterium isolated from marine sediment collected from the coast of Busan, Republic of Korea, was characterized using a polyphasic taxonomic approach. This strain showed growth at a temperature range of 20-37 degrees C (optimum, 30 degrees C), a pH range of 6.5-9.5 (optimum, 7.5), and in the presence of 0-3% (w/v) NaCl (optimum, 1%). Phylogenetic analysis based on 16S rRNA gene sequencing and 92 concatenated core genes indicated that CAU 1523(T) belonged to the genus Paenibacillus, sharing the highest sequence similarity with P. assamensis JCM 13186(T) (98.0%). CAU 1523(T) was differentiated from other Paenibacillus species by average nucleotide identity, average amino acid identity, and digital DNA-DNA hybridization values, using cut-off values of 95-96%, 90%, and 70%, respectively, for closely related strains. The genome of CAU 1523(T) possessed various biosynthetic gene clusters, one of which encoded a putative siderophore-interacting protein. Siderophore production by the isolate was confirmed using the qualitative chrome azurol sulfonate (CAS) agar assay. Based on its phylogenetic and physiological characteristics, strain CAU 1523(T) represents a novel, siderophore-producing species within the genus Paenibacillus, for which the name Paenibacillus arenosi sp. nov. is proposed, with the type strain CAU 1523(T) (= KCTC 43108(T) = MCCC 1K04063(T)).
引用
收藏
页数:8
相关论文
共 39 条
[1]  
Ali SS., 2011, Int J Microbiol Res, V3, P131, DOI DOI 10.9735/0975-5276.3.3.131-135
[2]   PHYLOGENETIC HETEROGENEITY OF THE GENUS BACILLUS REVEALED BY COMPARATIVE-ANALYSIS OF SMALL-SUBUNIT-RIBOSOMAL RNA SEQUENCES [J].
ASH, C ;
FARROW, JAE ;
WALLBANKS, S ;
COLLINS, MD .
LETTERS IN APPLIED MICROBIOLOGY, 1991, 13 (04) :202-206
[3]  
ASH C, 1993, ANTON LEEUW INT J G, V64, P253
[4]   Characterization of heterotrophic nitrifying bacteria with respiratory ammonification and denitrification activity - Description of Paenibacillus uliginis sp nov., an inhabitant of fen peat soil and Paenibacillus purispatii sp nov., isolated from a spacecraft assembly clean room [J].
Behrendt, Undine ;
Schumann, Peter ;
Stieglmeier, Michaela ;
Pukall, Ruediger ;
Augustin, Juergen ;
Sproeer, Cathrin ;
Schwendner, Petra ;
Moissl-Eichinger, Christine ;
Ulrich, Andreas .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 2010, 33 (06) :328-336
[5]   antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline [J].
Blin, Kai ;
Shaw, Simon ;
Steinke, Katharina ;
Villebro, Rasmus ;
Ziemert, Nadine ;
Lee, Sang Yup ;
Medema, Marnix H. ;
Weber, Tilmann .
NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W81-W87
[6]   Description of Cellulophaga algicola sp nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. [J].
Bowman, JP .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000, 50 :1861-1868
[7]  
Cappuccino JG, 2010, MICROBIOLOGY LAB MAN, V9th
[8]   Paenibacillus sinopodophylli sp nov., a siderophore-producing endophytic bacterium isolated from roots of Sinopodophyllum hexandrum (Royle) Ying [J].
Chen, Chaoqiong ;
Xin, Kaiyun ;
Li, Muhang ;
Li, Xin ;
Cheng, Juanli ;
Zhang, Lei ;
Shen, Xihui .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :4993-4999
[9]  
De Serrano Luis O., 2017, BioMolecular Concepts, V8, P169, DOI 10.1515/bmc-2017-0016
[10]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376