Comparative Analysis of Biological Networks Hidden Markov model and Markov chain-based approach

被引：20

作者：

Yoon, Byung-Jun ^{[1
]}

Qian, Xiaoning ^{[2
]}

Sahraeian, Sayed Mohammad Ebrahim

机构：

[1] Texas A&M Univ, Dept Elect & Comp Engn, College Stn, TX 77843 USA

[2] Univ S Florida, Dept Comp Sci & Engn, Tampa, FL 33620 USA

来源：

IEEE SIGNAL PROCESSING MAGAZINE | 2012年 / 29卷 / 01期

关键词：

PROTEIN-INTERACTION NETWORKS; CONSERVED PATHWAYS; GLOBAL ALIGNMENT; IDENTIFICATION; CANCER; DATABASE; YEAST; TOOL; CLASSIFICATION; INFERENCE;

D O I：

10.1109/MSP.2011.942819

中图分类号：

TM [电工技术]; TN [电子技术、通信技术];

学科分类号：

0808 ; 0809 ;

摘要：

The diverse cellular mechanisms that sustain the life of living organisms are carried out by numerous biomolecules, such as deoxyribonucleic acids (DNAs), ribonucleic acids (RNAs), and proteins. Over the past few decades, significant research efforts have been made to sequence the genomes of various species and to search these genomes to track down genes that give rise to proteins and noncoding RNAs (ncRNAs) [1], [2]. As a result, the catalog of known functional molecules in cells has experienced a rapid expansion. ©2012 IEEE.

引用

页码：22 / 34

页数：13

共 66 条

[41] Alignment of metabolic pathways [J].

Pinter, RY ;

Rokhlenko, O ;

Yeger-Lotem, E ;

Ziv-Ukelson, M .

BIOINFORMATICS, 2005, 21 (16) :3401-3408

[42] Enhancing the accuracy of HMM-based conserved pathway prediction using global correspondence scores [J].

Qian, Xiaoning ;

Sahraeian, Sayed Mohammad Ebrahim ;

Yoon, Byung-Jun .

BMC BIOINFORMATICS, 2011, 12

[43] Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception [J].

Qian, Xiaoning ;

Yoon, Byung-Jun .

BMC BIOINFORMATICS, 2011, 12

[44] Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models [J].

Qian, Xiaoning ;

Yoon, Byung-Jun .

PLOS ONE, 2009, 4 (12)

[45] Querying Pathways in Protein Interaction Networks Based on Hidden Markov Models [J].

Qian, Xiaoning ;

Sze, Sing-Hoi ;

Yoon, Byung-Jun .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2009, 16 (02) :145-157

[46] A TUTORIAL ON HIDDEN MARKOV-MODELS AND SELECTED APPLICATIONS IN SPEECH RECOGNITION [J].

RABINER, LR .

PROCEEDINGS OF THE IEEE, 1989, 77 (02) :257-286

[47]

Sahraeian SME, 2011, INT CONF ACOUST SPEE, P6008

[48] A Novel Low-Complexity HMM Similarity Measure [J].

Sahraeian, Sayed Mohammad Ebrahim ;

Yoon, Byung-Jun .

IEEE SIGNAL PROCESSING LETTERS, 2011, 18 (02) :87-90

[49] Genetics - Getting closer to the whole picture [J].

Sauer, Uwe ;

Heinemann, Matthias ;

Zamboni, Nicola .

SCIENCE, 2007, 316 (5824) :550-551

[50] Efficient algorithms for detecting signaling pathways in protein interaction networks [J].

Scott, J ;

Ideker, T ;

Karp, RM ;

Sharan, R .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2006, 13 (02) :133-144

← 1 2 3 4 5 6 7 →