Enhanced Logical Stochastic Resonance in Synthetic Genetic Networks

被引:28
作者
Wang, Nan [1 ]
Song, Aiguo [1 ]
机构
[1] Southeast Univ, Sch Instrument Sci & Engn, Nanjing 210096, Jiangsu, Peoples R China
基金
美国国家科学基金会;
关键词
Genetic network; memory gates; stochastic resonance; BISTABLE SYSTEM; STABILITY;
D O I
10.1109/TNNLS.2015.2495155
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
In this brief, the concept of logical stochastic resonance is applied to implement the Set-Reset latch in a synthetic gene network derived from a bacteriophage lambda. Clear Set-Reset latch operation is obtained when the network is only subjected to periodic forcing. The correct probability of obtaining the desired logic operation first increases to unity and then decreases as the amplitude of the periodic forcing increases. In addition, the output logic operation can be easily morphed by tuning the frequency and the amplitude of the periodic forcing. At the same time, we indicate that adding moderate periodic forcing to the background Gaussian noise may increase the length of the optimal plateau of getting the desired logic operation in genetic regulatory network. We also point out that robust Set-Reset latch operation can be obtained using the interplay of periodic forcing and background noise when the noise strength is lower than what is required.
引用
收藏
页码:2736 / 2739
页数:4
相关论文
共 19 条
[1]   Synthetic gene networks as potential flexible parallel logic gates [J].
Ando, Hiroyasu ;
Sinha, Sudeshna ;
Storni, Remo ;
Aihara, Kazuyuki .
EPL, 2011, 93 (05)
[2]   Refinement and standardization of synthetic biological parts and devices [J].
Canton, Barry ;
Labno, Anna ;
Endy, Drew .
NATURE BIOTECHNOLOGY, 2008, 26 (07) :787-793
[3]   Creating morphable logic gates using logical stochastic resonance in an engineered gene network [J].
Dari, Anna ;
Kia, Behnam ;
Bulsara, Adi R. ;
Ditto, William .
EPL, 2011, 93 (01)
[4]   A synthetic oscillatory network of transcriptional regulators [J].
Elowitz, MB ;
Leibler, S .
NATURE, 2000, 403 (6767) :335-338
[5]   Noise-free logical stochastic resonance [J].
Gupta, Animesh ;
Sohane, Aman ;
Kohar, Vivek ;
Murali, K. ;
Sinha, Sudeshna .
PHYSICAL REVIEW E, 2011, 84 (05)
[6]   Engineered gene circuits [J].
Hasty, J ;
McMillen, D ;
Collins, JJ .
NATURE, 2002, 420 (6912) :224-230
[7]   Designer gene networks: Towards fundamental cellular control [J].
Hasty, J ;
Isaacs, F ;
Dolnik, M ;
McMillen, D ;
Collins, JJ .
CHAOS, 2001, 11 (01) :207-220
[8]   Noise-Aided Logic in an Electronic Analog of Synthetic Genetic Networks [J].
Hellen, Edward H. ;
Dana, Syamal K. ;
Kurths, Juergen ;
Kehler, Elizabeth ;
Sinha, Sudeshna .
PLOS ONE, 2013, 8 (10)
[9]   The reliability of logical operation in a one-dimensional bistable system induced by non-Gaussian noise [J].
Jin Xiao-Qin ;
Xu Yong ;
Zhang Hui-Qing .
ACTA PHYSICA SINICA, 2013, 62 (19)
[10]   Enhanced logical stochastic resonance under periodic forcing [J].
Kohar, Vivek ;
Murali, K. ;
Sinha, Sudeshna .
COMMUNICATIONS IN NONLINEAR SCIENCE AND NUMERICAL SIMULATION, 2014, 19 (08) :2866-2873