Computer-based de novo design of drug-like molecules

被引:655
作者
Schneider, G [1 ]
Fechner, U [1 ]
机构
[1] Goethe Univ Frankfurt, Inst Organ Chem & Chem Biol, Beilstein Endowed Chair Cheminformat, D-60439 Frankfurt, Germany
关键词
D O I
10.1038/nrd1799
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Ever since the first automated de novo design techniques were conceived only 15 years ago, the computer-based design of hit and lead structure candidates has emerged as a complementary approach to high-throughput screening. Although many challenges remain, de novo design supports drug discovery projects by generating novel pharmaceutically active agents with desired properties in a cost- and time-efficient manner. In this review, we outline the various design concepts and highlight current developments in computer-based de novo design.
引用
收藏
页码:649 / 663
页数:15
相关论文
共 109 条
[1]   Multiobjective optimization of combinatorial libraries [J].
Agrafiotis, DK .
IBM JOURNAL OF RESEARCH AND DEVELOPMENT, 2001, 45 (3-4) :545-566
[2]   The Design and Docking of Virtual Compound Libraries to Structures of Drug Targets [J].
Anderson, Amy C. ;
Wright, Dennis L. .
CURRENT COMPUTER-AIDED DRUG DESIGN, 2005, 1 (01) :103-127
[3]   Predictive in silico modeling for hERG channelblockers [J].
Aronov, MM .
DRUG DISCOVERY TODAY, 2005, 10 (02) :149-155
[4]   DESIGN, SYNTHESIS AND X-RAY CRYSTALLOGRAPHIC STUDIES OF NOVEL FKBP-12 LIGANDS [J].
BABINE, RE ;
BLECKMAN, TM ;
KISSINGER, CR ;
SHOWALTER, R ;
PELLETIER, LA ;
LEWIS, C ;
TUCKER, K ;
MOOMAW, E ;
PARGE, HE ;
VILLAFRANCA, JE .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 1995, 5 (15) :1719-1724
[5]   High-throughput chemistry and structure-based design: survival of the smartest [J].
Bailey, D ;
Brown, D .
DRUG DISCOVERY TODAY, 2001, 6 (02) :57-59
[6]   The properties of known drugs .1. Molecular frameworks [J].
Bemis, GW ;
Murcko, MA .
JOURNAL OF MEDICINAL CHEMISTRY, 1996, 39 (15) :2887-2893
[7]   MULTIPLE HIGHLY DIVERSE STRUCTURES COMPLEMENTARY TO ENZYME BINDING-SITES - RESULTS OF EXTENSIVE APPLICATION OF A DE-NOVO DESIGN METHOD INCORPORATING COMBINATORIAL GROWTH [J].
BOHACEK, RS ;
MCMARTIN, C .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (13) :5560-5571
[8]  
Bohm H J, 1993, J Mol Recognit, V6, P131, DOI 10.1002/jmr.300060305
[9]   Combinatorial docking and combinatorial chemistry:: Design of potent non-peptide thrombin inhibitors [J].
Böhm, HJ ;
Banner, DW ;
Weber, L .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1999, 13 (01) :51-56
[10]   Prediction of binding constants of protein ligands: A fast method for the prioritization of hits obtained from de novo design or 3D database search programs [J].
Bohm, HJ .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1998, 12 (04) :309-323