Probing Oxygen Activation Sites in Two Flavoprotein Oxidases Using Chloride as an Oxygen Surrogate

被引:62
作者
Kommoju, Phaneeswara-Rao [2 ]
Chen, Zhi-wei [3 ]
Bruckner, Robert C. [2 ]
Mathews, F. Scott [1 ]
Jorns, Marilyn Schuman [2 ]
机构
[1] Washington Univ, Sch Med, Dept Biochem & Mol Biophys, St Louis, MO 63110 USA
[2] Drexel Univ, Coll Med, Dept Biochem & Mol Biol, Philadelphia, PA 19102 USA
[3] St Louis Univ, Sch Med, Dept Biochem & Mol Biol, St Louis, MO 63104 USA
基金
美国国家卫生研究院;
关键词
MONOMERIC SARCOSINE OXIDASE; X-RAY-DIFFRACTION; GLUCOSE-OXIDASE; CRYSTAL-STRUCTURE; RESOLUTION STRUCTURES; ELECTRON-TRANSFER; URATE OXIDASE; BINDING-SITE; SUBSTRATE; O-2;
D O I
10.1021/bi200388g
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
single basic residue above the si-face of the flavin ring is the site of oxygen activation in glucose oxidase (GOX) (His516) and monomeric sarcosine oxidase (MSOX) (Lys265). Crystal structures of both flavoenzymes exhibit a small pocket at the oxygen activation site that might provide a preorganized binding site for superoxide anion, an obligatory intermediate in the two-electron reduction of oxygen. Chloride binds at these polar oxygen activation sites, as judged by solution and structural studies. First, chloride forms spectrally detectable complexes with GOX and MSOX. The protonated form of His516 is required for tight binding of chloride to oxidized GOX and for rapid reaction of reduced GOX with oxygen. Formation of a binary MSOX . chloride complex requires Lys265 and is not observed with Lys265Met. Binding of chloride to MSOX does not affect the binding of a sarcosine analogue (MTA, methylthioactetate) above the re-face of the flavin ring. Definitive evidence is provided by crystal structures determined for a binary MSOX . chloride complex and a ternary MSOX . chloride . MTA complex. Chloride binds in the small pocket at a position otherwise occupied by a water molecule and forms hydrogen bonds to four ligands that are arranged in approximate tetrahedral geometry: Lys265:NZ, Arg49:NH1, and two water molecules, one of which is hydrogen bonded to FAD:N5. The results show that chloride (i) acts as an oxygen surrogate, (ii) is an effective probe of polar oxygen activation sites, and (iii) provides a valuable complementary tool to the xenon gas method that is used to map nonpolar oxygen-binding cavities.
引用
收藏
页码:5521 / 5534
页数:14
相关论文
共 45 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   Crystal structure of pentaerythritol tetranitrate reductase: "Flipped" binding geometries for steroid substrates in different redox states of the enzyme [J].
Barna, TM ;
Khan, H ;
Bruce, NC ;
Barsukov, I ;
Scrutton, NS ;
Moody, PCE .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 310 (02) :433-447
[3]   A stable three-enzyme creatinine biosensor. 1. Impact of structure, function and environment on PEGylated and immobilized sarcosine oxidase [J].
Berberich, JA ;
Yang, LW ;
Madura, J ;
Bahar, I ;
Russell, AJ .
ACTA BIOMATERIALIA, 2005, 1 (02) :173-181
[4]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[5]   GMC OXIDOREDUCTASES - A NEWLY DEFINED FAMILY OF HOMOLOGOUS PROTEINS WITH DIVERSE CATALYTIC ACTIVITIES [J].
CAVENER, DR .
JOURNAL OF MOLECULAR BIOLOGY, 1992, 223 (03) :811-814
[6]  
Cohen J, 2006, BIOPHYS J, V91, P1844, DOI [10.1529/biophysj.106.085746, 10.1529/biopbysj.106.085746]
[7]   Oxygen pressurized X-ray crystallography:: Probing the dioxygen binding site in cofactorless urate oxidase and implications for its catalytic mechanism [J].
Colloc'h, Nathalie ;
Gabison, Laure ;
Monard, Gerald ;
Altarsha, Muhannad ;
Chiadmi, Mohamed ;
Marassio, Guillaume ;
Santos, Jana Sopkova-de Oliveria ;
El Hajji, Mohamed ;
Castro, Bertrand ;
Abraini, Jacques H. ;
Prange, Thierry .
BIOPHYSICAL JOURNAL, 2008, 95 (05) :2415-2422
[8]   Deglycosylation of Glucose Oxidase for Direct and Efficient Glucose Electrooxidation on a Glassy Carbon Electrode [J].
Courjean, Olivier ;
Gao, Feng ;
Mano, Nicolas .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2009, 48 (32) :5897-5899
[9]   L-pipecolic acid oxidase, a human enzyme essential for the degradation of L-pipecolic acid, is most similar to the monomeric sarcosine oxidases [J].
Dodt, G ;
Kim, DG ;
Reimann, SA ;
Reuber, BE ;
McCabe, K ;
Gould, SJ ;
Mihalik, SJ .
BIOCHEMICAL JOURNAL, 2000, 345 :487-494
[10]   Using xenon as a probe for dioxygen-binding sites in copper amine oxidases [J].
Duff, AP ;
Trambaiolo, DM ;
Cohen, AE ;
Ellis, PJ ;
Juda, GA ;
Shepard, EM ;
Langley, DB ;
Dooley, DM ;
Freeman, HC ;
Guss, JM .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 344 (03) :599-607