Complete Genome Sequence of Metallosphaera cuprina, a Metal Sulfide-Oxidizing Archaeon from a Hot Spring

被引:26
作者
Liu, Li-Jun [1 ]
You, Xiao-Yan [1 ,2 ]
Zheng, Huajun [3 ]
Wang, Shengyue [3 ]
Jiang, Cheng-Ying [1 ,2 ]
Liu, Shuang-Jiang [1 ,2 ]
机构
[1] Chinese Acad Sci, Inst Microbiol, State Key Lab Microbial Resource, Beijing 100101, Peoples R China
[2] Inst Microbiol, Environm Microbiol Res Ctr, Beijing 100101, Peoples R China
[3] Chinese Natl Human Genome Ctr, Shanghai MOST Key Lab Hlth & Dis Genom, Shanghai, Peoples R China
基金
美国国家科学基金会;
关键词
HIGH-TEMPERATURE; SEDULA; BACTERIA;
D O I
10.1128/JB.05038-11
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The genome of the metal sulfide-oxidizing, thermoacidophilic strain Metallosphaera cuprina Ar-4 has been completely sequenced and annotated. Originally isolated from a sulfuric hot spring, strain Ar-4 grows optimally at 65 degrees C and a pH of 3.5. The M. cuprina genome has a 1,840,348-bp circular chromosome (2,029 open reading frames [ORFs]) and is 16% smaller than the previously sequenced Metallosphaera sedula genome. Compared to the M. sedula genome, there are no counterpart genes in the M. cuprina genome for about 480 ORFs in the M. sedula genome, of which 243 ORFs are annotated as hypothetical protein genes. Still, there are 233 ORFs uniquely occurring in M. cuprina. Genome annotation supports that M. cuprina lives a facultative life on CO(2) and organics and obtains energy from oxidation of sulfidic ores and reduced inorganic sulfuric compounds.
引用
收藏
页码:3387 / 3388
页数:2
相关论文
共 14 条
[1]   The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism [J].
Auernik, Kathryne S. ;
Maezato, Yukari ;
Blum, Paul H. ;
Kelly, Robert M. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (03) :682-692
[2]   Identification of Components of Electron Transport Chains in the Extremely Thermoacidophilic Crenarchaeon Metallosphaera sedula through Iron and Sulfur Compound Oxidation Transcriptomes [J].
Auernik, Kathryne S. ;
Kelly, Robert M. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (24) :7723-7732
[3]   SULFOLOBUS - NEW GENUS OF SULFUR-OXIDIZING BACTERIA LIVING AT LOW PH AND HIGH-TEMPERATURE [J].
BROCK, TD ;
BROCK, KM ;
BELLY, RT ;
WEISS, RL .
ARCHIV FUR MIKROBIOLOGIE, 1972, 84 (01) :54-&
[4]   Identifying bacterial genes and endosymbiont DNA with Glimmer [J].
Delcher, Arthur L. ;
Bratke, Kirsten A. ;
Powers, Edwin C. ;
Salzberg, Steven L. .
BIOINFORMATICS, 2007, 23 (06) :673-679
[5]  
Han CJ, 1998, BIOTECHNOL BIOENG, V58, P617, DOI 10.1002/(SICI)1097-0290(19980620)58:6<617::AID-BIT7>3.0.CO
[6]  
2-L
[7]   Metagenomes from High-Temperature Chemotrophic Systems Reveal Geochemical Controls on Microbial Community Structure and Function [J].
Inskeep, William P. ;
Rusch, Douglas B. ;
Jay, Zackary J. ;
Herrgard, Markus J. ;
Kozubal, Mark A. ;
Richardson, Toby H. ;
Macur, Richard E. ;
Hamamura, Natsuko ;
Jennings, Ryan deM. ;
Fouke, Bruce W. ;
Reysenbach, Anna-Louise ;
Roberto, Frank ;
Young, Mark ;
Schwartz, Ariel ;
Boyd, Eric S. ;
Badger, Jonathan H. ;
Mathur, Eric J. ;
Ortmann, Alice C. ;
Bateson, Mary ;
Geesey, Gill ;
Frazier, Marvin .
PLOS ONE, 2010, 5 (03)
[8]   Terminal Oxidase Diversity and Function in "Metallosphaera yellowstonensis": Gene Expression and Protein Modeling Suggest Mechanisms of Fe(II) Oxidation in the Sulfolobales [J].
Kozubal, M. A. ;
Dlakic, M. ;
Macur, R. E. ;
Inskeep, W. P. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (05) :1844-1853
[9]   Metallosphaera cuprina sp nov., an acidothermophilic, metal-mobilizing archaeon [J].
Liu, Li-Jun ;
You, Xiao-Yan ;
Guo, Xu ;
Liu, Shuang-Jiang ;
Jiang, Cheng-Ying .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2011, 61 :2395-2400
[10]   Linking geochemical processes with microbial community analysis: successional dynamics in an arsenic-rich, acid-sulphate-chloride geothermal spring [J].
Macur, R. E. ;
Langner, H. W. ;
Kocar, B. D. ;
Inskeep, W. P. .
GEOBIOLOGY, 2004, 2 (03) :163-177