Shewanella japonica sp nov.

被引:79
作者
Ivanova, EP
Sawabe, T
Gorshkova, NM
Svetashev, VI
Mikhailov, VV
Nicolau, DV
Christen, R
机构
[1] Russian Acad Sci, Pacific Inst Bioorgan Chem, Far Eastern Branch, Vladivostok 690022, Russia
[2] Hokkaido Univ, Fac Fisheries, Microbiol Lab, Hakodate, Hokkaido 0418611, Japan
[3] Russian Acad Sci, Inst Marine Biol, Far Eastern Branch, Vladivostok 690041, Russia
[4] Swinburne Univ Technol, Ind Res Inst, Hawthorn, Vic 3122, Australia
[5] Univ Paris 06, Stn Zool, F-06230 Villefranche Sur Mer, France
[6] CNRS, F-06230 Villefranche Sur Mer, France
关键词
Shewanella japonica sp nov;
D O I
10.1099/00207713-51-3-1027
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two strains of agar-digesting bacteria, KMM 3299(T) and KMM 3300, respectively isolated from sea water and the mussel Protothaca jedoensis, have been characterized. Based on sequencing of the 16S rRNA gene, KMM 3299T showed the highest similarity (93-95 %) to members of the genus Shewanella. The G+C contents of the DNAs of these strains were 43-44 mol%. The level of DNA homology between the two strains was conspecific (95 %), indicating that they represent a distinct genospecies. These organisms were non-pigmented, Gramnegative, polarly flagellated, facultatively anaerobic, mesophilic, neutrophilic and able to degrade a wide range of high molecular mass polymers, including alginate, carrageenan, laminaran and agar. The novel organisms were susceptible to gentamycin, carbenicillin, lincomycin and oleandomycin. The predominant cellular fatty acids were i-15:0, 16:0, 16:1(n-7), 18:1(n-7). Eicosapentaenoic acid, 20:5(n-3), was detected in the two isolates at levels of 1-8 %, depending on the temperature of cultivation. Phylogenetic evidence, together with phenotypic characteristics, showed that the two isolates studied constitute a novel species of the genus Shewanella. The name Shewanella japonica is proposed; the type strain is KMM 3299(T)(= LMG 19691(T) = CIP 106860(T)).
引用
收藏
页码:1027 / 1033
页数:7
相关论文
共 23 条
  • [1] Barry AI, 1980, ANTIBIOTICS LAB MED, P10
  • [2] TAXONOMY OF AEROBIC MARINE EUBACTERIA
    BAUMANN, L
    BAUMANN, P
    ALLEN, RD
    MANDEL, M
    [J]. JOURNAL OF BACTERIOLOGY, 1972, 110 (01) : 402 - +
  • [3] Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5 omega 3) and grow anaerobically by dissimilatory Fe(III) reduction
    Bowman, JP
    McCammon, SA
    Nichols, DS
    Skerratt, JH
    Rea, SM
    Nichols, PD
    McMeekin, TA
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (04): : 1040 - 1047
  • [4] DELEY J, 1970, EUR J BIOCHEM, V12, P133
  • [5] BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
    Gascuel, O
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 1997, 14 (07) : 685 - 695
  • [6] Characterization and identification of marine Alteromonas nigrifaciens strains and emendation of the description
    Ivanova, EP
    Kiprianova, EA
    Mikhailov, VV
    Levanova, GF
    Garagulya, AD
    Gorshkova, NM
    Yumoto, N
    Yoshikawa, S
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1996, 46 (01): : 223 - 228
  • [7] Phenotypic diversity of Pseudoalteromonas citrea from different marine habitats and emendation of the description
    Ivanova, EP
    Kiprianova, EA
    Mikhailov, VV
    Levanova, GF
    Garagulya, AD
    Gorshkova, NM
    Vysotskii, MV
    Nicolau, DV
    Yumoto, N
    Taguchi, T
    Yoshikawa, S
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1998, 48 : 247 - 256
  • [8] Multiple sequence alignment with Clustal x
    Jeanmougin, F
    Thompson, JD
    Gouy, M
    Higgins, DG
    Gibson, TJ
    [J]. TRENDS IN BIOCHEMICAL SCIENCES, 1998, 23 (10) : 403 - 405
  • [9] PROCEDURE FOR ISOLATION OF DEOXYRIBONUCLEIC ACID FROM MICRO-ORGANISMS
    MARMUR, J
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1961, 3 (02) : 208 - &
  • [10] DETERMINATION OF BASE COMPOSITION OF DEOXYRIBONUCLEIC ACID FROM ITS THERMAL DENATURATION TEMPERATURE
    MARMUR, J
    DOTY, P
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1962, 5 (01) : 109 - &