Protein dynamics and allostery: an NMR view

被引:208
作者
Tzeng, Shiou-Ru [1 ]
Kalodimos, Charalampos G. [1 ,2 ,3 ]
机构
[1] Rutgers State Univ, Dept Chem & Chem Biol, Piscataway, NJ 08854 USA
[2] Rutgers State Univ, Dept Biomed Engn, Piscataway, NJ 08854 USA
[3] Rutgers State Univ, BioMaPS Inst Quantitat Biol, Piscataway, NJ 08854 USA
基金
美国国家科学基金会;
关键词
CONFORMATIONAL ENTROPY; PDZ DOMAIN; SUBSTRATE RECOGNITION; MOLECULAR RECOGNITION; SIGNAL-TRANSDUCTION; INTRINSIC DYNAMICS; STRUCTURAL BASIS; BINDING; ACTIVATION; CATALYSIS;
D O I
10.1016/j.sbi.2010.10.007
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Allostery, the process by which distant sites within a protein system are energetically coupled, is an efficient and ubiquitous mechanism for activity regulation. A purely mechanical view of allostery invoking only structural changes has developed over the decades as the classical view of the phenomenon. However, a fast growing list of examples illustrate the intimate link between internal motions over a wide range of time scales and function in protein-ligand interactions. Proteins respond to perturbations by redistributing their motions and they use fluctuating conformational states for binding and conformational entropy as a carrier of allosteric energy to modulate association with ligands. In several cases allosteric interactions proceed with minimal or no structural changes. We discuss emerging paradigms for the central role of protein dynamics in allostery.
引用
收藏
页码:62 / 67
页数:6
相关论文
共 70 条
[1]   Intrinsic dynamics of enzymes in the unbound state and, relation to allosteric regulation [J].
Bahar, Ivet ;
Chennubhotla, Chakra ;
Tobi, Dror .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2007, 17 (06) :633-640
[2]   NMR spectroscopy brings invisible protein states into focus [J].
Baldwin, Andrew J. ;
Kay, Lewis E. .
NATURE CHEMICAL BIOLOGY, 2009, 5 (11) :808-814
[3]   (Thermo)dynamic role of receptor flexibility, entropy, and motional correlation in protein-ligand binding [J].
Baron, Riccardo ;
McCammon, J. Andrew .
CHEMPHYSCHEM, 2008, 9 (07) :983-988
[4]   The dynamic energy landscape of dihydrofolate reductase catalysis [J].
Boehr, David D. ;
McElheny, Dan ;
Dyson, H. Jane ;
Wright, Peter E. .
SCIENCE, 2006, 313 (5793) :1638-1642
[5]   The role of dynamic conformational ensembles in biomolecular recognition [J].
Boehr, David D. ;
Nussinov, Ruth ;
Wright, Peter E. .
NATURE CHEMICAL BIOLOGY, 2009, 5 (11) :789-796
[6]   Compensatory and long-range changes in picosecond-nanosecond main-chain dynamics upon complex formation:: 15N relaxation analysis of the free and bound states of the ubiquitin-like domain of human plexin-B1 and the small GTPase Rac1 [J].
Bouguet-Bonnet, S. ;
Buck, M. .
JOURNAL OF MOLECULAR BIOLOGY, 2008, 377 (05) :1474-1487
[7]  
BRUSCHWEILER S, 2009, J AM CHEM SOC
[8]   Protein structure determination from NMR chemical shifts [J].
Cavalli, Andrea ;
Salvatella, Xavier ;
Dobson, Christopher M. ;
Vendruscolo, Michele .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (23) :9615-9620
[9]   Allosteric mechanisms of signal transduction [J].
Changeux, JP ;
Edelstein, SJ .
SCIENCE, 2005, 308 (5727) :1424-1428
[10]   Dynamic coupling and allosteric behavior in a nonallosteric protein [J].
Clarkson, Michael W. ;
Gilmore, Steven A. ;
Edgell, Marshall H. ;
Lee, Andrew L. .
BIOCHEMISTRY, 2006, 45 (25) :7693-7699