Molecular data from the 16S rRNA gene for the phylogeny of Veneridae (Mollusca: Bivalvia)

被引:43
作者
Canapa, A
Schiaparelli, S
Marota, I
Barucca, M
机构
[1] Univ Ancona, Fac Sci, I-60131 Ancona, Italy
[2] Univ Genoa, Dipartimento Studio Terr & Risorse, Genoa, Italy
[3] Univ Camerino, Dipartimento Biol Mol Cellulare & Anim, I-62032 Camerino, Italy
关键词
D O I
10.1007/s00227-003-1048-1
中图分类号
Q17 [水生生物学];
学科分类号
071004 ;
摘要
Veneridae, a cosmopolitan and ubiquitous family in world-wide littoral environments, lists more than 500 species, many of which are often subject to intensive commercial exploitation due to their numerical dominance in benthic communities. Historically, the family has been divided into 12 subfamilies by M. Keen and, even though this taxonomical arrangement was adopted for convenience and does not necessarily reflect genetic relationships, as suggested by Keen herself, this classification is still accepted. To contribute to clarify the systematics and phylogeny of Veneridae, the portion of the nucleotide sequence corresponding to domains IV and V of the gene encoding the large subunit of mitochondrial ribosomal RNA was analysed in 14 species representative of 10 genera belonging to 6 different subfamilies. The results obtained using the maximum-parsimony and neighbour-joining methods indicate that the current placement of the genera into subfamilies does not always reflect a natural subdivision. In addition, the six species of Tapetinae studied, though confirmed to be a monophyletic clade, do not exhibit a correct attribution at the genus level.
引用
收藏
页码:1125 / 1130
页数:6
相关论文
共 50 条
[41]   Community analysis of picocyanobacteria in an oligotrophic lake by cloning 16S rRNA gene and 16S rRNA gene amplicon sequencing [J].
Fujimoto, Naoshi ;
Mizuno, Keigo ;
Yokoyama, Tomoki ;
Ohnishi, Akihiro ;
Suzuki, Masaharu ;
Watanabe, Satoru ;
Komatsu, Kenji ;
Sakata, Yoichi ;
Kishida, Naohiro ;
Akiba, Michihiro ;
Matsukura, Satoko .
JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY, 2015, 61 (05) :171-176
[42]   The variable 5′ end of the 16S rRNA gene as a novel barcoding tool for scallops (Bivalvia, Pectinidae) [J].
Alan Marín ;
Takafumi Fujimoto ;
Katsutoshi Arai .
Fisheries Science, 2015, 81 :73-81
[43]   A molecular phylogeny of heterodont bivalves (Mollusca: Bivalvia: Heterodonta):: new analyses of 18S and 28S rRNA genes [J].
Taylor, John D. ;
Williams, Suzanne T. ;
Glover, Emily A. ;
Dyal, Patricia .
ZOOLOGICA SCRIPTA, 2007, 36 (06) :587-606
[44]   Molecular characterization of the mitochondrial 16S rRNA gene of cattle, buffalo and yak [J].
Saikia, Deep P. ;
Kalita, Dhruba J. ;
Borah, Probodh ;
Sarma, Satya ;
Dutta, Rupam ;
Rajkhowa, Deekshita .
VETERINARSKI ARHIV, 2016, 86 (06) :777-785
[45]   16S rRNA gene amplicon sequencing data from an Australian wastewater treatment plant [J].
Romanis, C. S. ;
Timms, V. J. ;
Crosbie, N. D. ;
Neilan, B. A. .
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2024, 13 (06)
[46]   16S rRNA gene amplicon sequence data from sunflower endosphere bacterial community [J].
Babalola, Olubukola Oluranti ;
Adeleke, Bartholomew Saanu ;
Ayangbenro, Ayansina Segun .
DATA IN BRIEF, 2021, 39
[47]   Molecular identification of adulteration in mutton based on mitochondrial 16S rRNA gene [J].
Xu, Jia ;
Zhao, Wei ;
Zhu, Mengru ;
Wen, Yuanju ;
Xie, Tao ;
He, Xiaoqian ;
Zhang, Yongfeng ;
Cao, Suizhong ;
Niu, Lili ;
Zhang, Hongping ;
Zhong, Tao .
MITOCHONDRIAL DNA PART A, 2016, 27 (01) :628-632
[48]   High or low correlation between co-occuring gene clusters and 16S rRNA gene phylogeny [J].
Rudi, Knut ;
Sekelja, Monika .
FEMS MICROBIOLOGY LETTERS, 2013, 339 (01) :23-29
[49]   Virtual metagenome reconstruction from 16S rRNA gene sequences [J].
Shujiro Okuda ;
Yuki Tsuchiya ;
Chiho Kiriyama ;
Masumi Itoh ;
Hisao Morisaki .
Nature Communications, 3
[50]   Virtual metagenome reconstruction from 16S rRNA gene sequences [J].
Okuda, Shujiro ;
Tsuchiya, Yuki ;
Kiriyama, Chiho ;
Itoh, Masumi ;
Morisaki, Hisao .
NATURE COMMUNICATIONS, 2012, 3