The coming of age of de novo protein design

被引:962
|
作者
Huang, Po-Ssu [1 ,2 ,3 ,4 ]
Boyken, Scott E. [1 ,2 ,3 ]
Baker, David [1 ,2 ,3 ]
机构
[1] Univ Washington, Dept Biochem, Seattle, WA 98195 USA
[2] Univ Washington, Inst Prot Design, Seattle, WA 98195 USA
[3] Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USA
[4] Stanford Univ, Dept Bioengn, Stanford, CA 94305 USA
关键词
COMPUTATIONAL DESIGN; REPEAT-PROTEIN; ACCURATE DESIGN; SEQUENCE; DNA; OLIGOMERS; EVOLUTION; ENZYMES; PACKING; MODEL;
D O I
10.1038/nature19946
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
There are 20(200) possible amino-acid sequences for a 200-residue protein, of which the natural evolutionary process has sampled only an infinitesimal subset. De novo protein design explores the full sequence space, guided by the physical principles that underlie protein folding. Computational methodology has advanced to the point that a wide range of structures can be designed from scratch with atomic-level accuracy. Almost all protein engineering so far has involved the modification of naturally occurring proteins; it should now be possible to design new functional proteins from the ground up to tackle current challenges in biomedicine and nanotechnology.
引用
收藏
页码:320 / 327
页数:8
相关论文
共 50 条
  • [21] De novo protein design with a language model
    Kotsiliti, Eleni
    NATURE BIOTECHNOLOGY, 2022, 40 (10) : 1433 - 1433
  • [22] Minimalist de Novo Design of Protein Catalysts
    Marshall, Liam R.
    Zozulia, Oleksii
    Lengyel-Zhand, Zsofia
    Korendovych, Ivan, V
    ACS CATALYSIS, 2019, 9 (10) : 9265 - 9275
  • [23] Protein design: The choice of de novo sequences
    Beasley, JR
    Hecht, MH
    JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (04) : 2031 - 2034
  • [24] Sparks of function by de novo protein design
    Alexander E. Chu
    Tianyu Lu
    Po-Ssu Huang
    Nature Biotechnology, 2024, 42 : 203 - 215
  • [25] TEMPLATES IN PROTEIN DE-NOVO DESIGN
    TUCHSCHERER, G
    MUTTER, M
    JOURNAL OF BIOTECHNOLOGY, 1995, 41 (2-3) : 197 - 210
  • [26] De novo backbone scaffolds for protein design
    MacDonald, Jarnes T.
    Maksimiak, Katarzyna
    Sadowski, Michael I.
    Taylor, William R.
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2010, 78 (05) : 1311 - 1325
  • [27] DE NOVO DESIGN OF BIOACTIVE PROTEIN SWITCHES
    Langan, Robert
    Boyken, Scott
    Ng, Andrew
    Samson, Jennifer
    Dods, Galen
    Taylor Nguyen
    Westbrook, Alexandra
    Lajoie, Marc
    Chen, Zibo
    Berger, Stephanie
    Mulligan, Vikram
    Dueber, John
    Novak, Walter
    El-Samad, Hana
    Baker, David
    PROTEIN SCIENCE, 2019, 28 : 47 - 48
  • [28] Protein folding and de novo protein design for biotechnological applications
    Khoury, George A.
    Smadbeck, James
    Kieslich, Chris A.
    Floudas, Christodoulos A.
    TRENDS IN BIOTECHNOLOGY, 2014, 32 (02) : 99 - 109
  • [29] Modulation and de novo design of protein-protein interactions
    不详
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2005, 22 (06): : 809 - 810
  • [30] De novo protein design of photochemical reaction centers
    Nathan M. Ennist
    Zhenyu Zhao
    Steven E. Stayrook
    Bohdana M. Discher
    P. Leslie Dutton
    Christopher C. Moser
    Nature Communications, 13