Integrated bioinformatics analysis of the NEDD4 family reveals a prognostic value of NEDD4L in clear-cell renal cell cancer

被引:10
作者
Zhao, Hui [1 ,2 ]
Zhang, Junjun [3 ]
Fu, Xiaoliang [4 ]
Mao, Dongdong [1 ]
Qi, Xuesen [1 ]
Liang, Shuai [1 ]
Meng, Gang [1 ]
Song, Zewen [3 ]
Yang, Ru [5 ]
Guo, Zhenni [6 ]
Tong, Binghua [6 ]
Sun, Meiqing [6 ]
Zuo, Baile [7 ]
Li, Guoyin [6 ,8 ]
机构
[1] Weifang Med Univ, Affiliated Hosp, Dept Urol, Weifang, Peoples R China
[2] Capital Med Univ, China Rehabil Res Ctr, Dept Urol, Rehabil Sch, Beijing, Peoples R China
[3] Cent South Univ, Xiangya Hosp 3, Dept Oncol, Changsha, Peoples R China
[4] Air Force Med Univ, Affiliated Hosp 2, Dept Urol, Xian, Peoples R China
[5] Xinxiang Med Univ, Henan Key Lab Neurorestoratol, Affliated Hosp 1, Weihui, Peoples R China
[6] Zhoukou Normal Univ, Coll Life Sci & Agron, Zhoukou, Peoples R China
[7] Xinxiang Med Univ, Sch Lab Med, Tumor Mol Immunol & Immunotherapy Lab, Xinxiang, Henan, Peoples R China
[8] Zhengzhou Univ, Acad Med Sci, Zhengzhou, Peoples R China
来源
PEERJ | 2021年 / 9卷
基金
中国国家自然科学基金; 中国博士后科学基金;
关键词
NEDD4L; Bioinformatics; Clear-cell renal cell cancer; Prognosis; Metabolism; E3 UBIQUITIN LIGASES; BREAST-CANCER; POOR-PROGNOSIS; ACID-METABOLISM; FATTY-ACID; EXPRESSION; PROTEIN; CARCINOMA; GROWTH; PTEN;
D O I
10.7717/peerj.11880
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The members of the Nedd4-like E3 family participate in various biological processes. However, their role in clear cell renal cell carcinoma (ccRCC) is not clear. This study systematically analyzed the Nedd4-like E3 family members in ccRCC data sets from multiple publicly available databases. NEDD4L was identified as the only NEDD4 family member differentially expressed in ccRCC compared with normal samples. Bioinformatics tools were used to characterize the function of NEDD4L in ccRCC. It indicated that NEDD4L might regulate cellular energy metabolism by co-expression analysis, and subsequent gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. A prognostic model developed by the LASSO Cox regression method showed a relatively good predictive value in training and testing data sets. The result revealed that NEDD4L was associated with biosynthesis and metabolism of ccRCC. Since NEDD4L is downregulated and dysregulation of metabolism is involved in tumor progression, NEDD4L might be a potential therapeutic target in ccRCC.
引用
收藏
页数:25
相关论文
共 74 条
  • [1] Oncogenic Role of the E3 Ubiquitin Ligase NEDD4-1, a PTEN Negative Regulator, in Non-Small-Cell Lung Carcinomas
    Amodio, Nicola
    Scrima, Marianna
    Palaia, Lucia
    Salman, Ali Naeem
    Quintiero, Alfina
    Franco, Renato
    Botti, Gerardo
    Pirozzi, Pino
    Rocco, Gaetano
    De Rosa, Nicla
    Viglietto, Giuseppe
    [J]. AMERICAN JOURNAL OF PATHOLOGY, 2010, 177 (05) : 2622 - 2634
  • [2] NEDD4: The founding member of a family of ubiquitin-protein ligases
    Boase, Natasha Anne
    Kumar, Sharad
    [J]. GENE, 2015, 557 (02) : 113 - 122
  • [3] NEDD4 Family of E3 Ubiquitin Ligases in Breast Cancer: Spotlight on SMURFs, WWPs and NEDD4
    Butt, Ghazala
    Yaylim, Ilhan
    Attar, Rukset
    Aras, Aliye
    Azalea Romero, Mirna
    Qureshi, Muhammad Zahid
    Purenovic, Jelena
    Farooqi, Ammad Ahmad
    [J]. BREAST CANCER METASTASIS AND DRUG RESISTANCE: CHALLENGES AND PROGRESS, 2ND EDITION, 2019, 1152 : 365 - 375
  • [4] Ubiquitin E3 ligase WWP1 as an oncogenic factor in human prostate cancer
    Chen, C.
    Sun, X.
    Guo, P.
    Dong, X-Y
    Sethi, P.
    Zhou, W.
    Zhou, Z.
    Petros, J.
    Frierson, H. F., Jr.
    Vessella, R. L.
    Atfi, A.
    Dong, J-T
    [J]. ONCOGENE, 2007, 26 (16) : 2386 - 2394
  • [5] The Nedd4-like family of E3 ubiquitin ligases and cancer
    Chen, Ceshi
    Matesic, Lydia E.
    [J]. CANCER AND METASTASIS REVIEWS, 2007, 26 (3-4) : 587 - 604
  • [6] The amplified WWP1 gene is a potential molecular target in breast cancer
    Chen, Ceshi
    Zhou, Zhongmei
    Ross, Jeffrey S.
    Zhou, Wei
    Dong, Jin-Tang
    [J]. INTERNATIONAL JOURNAL OF CANCER, 2007, 121 (01) : 80 - 87
  • [7] Chen JJ, 2018, AM J CANCER RES, V8, P256
  • [8] The expanded role of fatty acid metabolism in cancer: new aspects and targets
    Chen, Ming
    Huang, Jiaoti
    [J]. PRECISION CLINICAL MEDICINE, 2019, 2 (03) : 183 - 191
  • [9] Differential expression profiling of microRNAs and their potential involvement in renal cell carcinoma pathogenesis
    Chow, Tsz-Fung F.
    Youssef, Youssef M.
    Lianidou, Evi
    Romaschin, Alexander D.
    Honey, R. John
    Stewart, Robert
    Pace, Kenneth T.
    Yousef, George M.
    [J]. CLINICAL BIOCHEMISTRY, 2010, 43 (1-2) : 150 - 158
  • [10] Identification of a Novel Protein-Based Signature to Improve Prognosis Prediction in Renal Clear Cell Carcinoma
    Chu, Guangdi
    Xu, Ting
    Zhu, Guanqun
    Liu, Shuaihong
    Niu, Haitao
    Zhang, Mingxin
    [J]. FRONTIERS IN MOLECULAR BIOSCIENCES, 2021, 8