Mutations in artificial self-replicating tiles: A step toward Darwinian evolution

被引:10
作者
Zhou, Feng [1 ]
Sha, Ruojie [2 ]
Ni, Heng [1 ]
Seeman, Nadrian [2 ]
Chaikin, Paul [1 ]
机构
[1] NYU, Dept Phys, New York, NY 10003 USA
[2] NYU, Dept Chem, New York, NY 10003 USA
关键词
artificial self-replication; mutation; Darwinian evolution; exponential growth; cross-tile DNA origami; DNA; INFORMATION; GROWTH;
D O I
10.1073/pnas.2111193118
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Artificial self-replication and exponential growth holds the promise of gaining a better understanding of fundamental processes in nature but also of evolving new materials and devices with useful properties. A system of DNA origami dimers has been shown to exhibit exponential growth and selection. Here we introduce mutation and growth advantages to study the possibility of Darwinian-like evolution. We seed and grow one dimer species, AB, from A and B monomers that doubles in each cycle. A similar species from C and D monomers can replicate at a controlled growth rate of two or four per cycle but is unseeded. Introducing a small mutation rate so that AB parents infrequently template CD offspring we show experimentally that the CD species can take over the system in approximately six generations in an advantageous environment. This demonstration opens the door to the use of evolution in materials design.
引用
收藏
页数:7
相关论文
共 23 条
  • [1] Self-assembly of a nanoscale DNA box with a controllable lid
    Andersen, Ebbe S.
    Dong, Mingdong
    Nielsen, Morten M.
    Jahn, Kasper
    Subramani, Ramesh
    Mamdouh, Wael
    Golas, Monika M.
    Sander, Bjoern
    Stark, Holger
    Oliveira, Cristiano L. P.
    Pedersen, Jan Skov
    Birkedal, Victoria
    Besenbacher, Flemming
    Gothelf, Kurt V.
    Kjems, Jorgen
    [J]. NATURE, 2009, 459 (7243) : 73 - U75
  • [2] Self-assembled three-dimensional chiral colloidal architecture
    Ben Zion, Matan Yah
    He, Xiaojin
    Maass, Corinna C.
    Sha, Ruojie
    Seeman, Nadrian C.
    Chaikin, Paul M.
    [J]. SCIENCE, 2017, 358 (6363) : 633 - +
  • [3] Self-assembly of DNA into nanoscale three-dimensional shapes
    Douglas, Shawn M.
    Dietz, Hendrik
    Liedl, Tim
    Hoegberg, Bjoern
    Graf, Franziska
    Shih, William M.
    [J]. NATURE, 2009, 459 (7245) : 414 - 418
  • [4] Eigen M., 2012, HYPERCYCLE PRINCIPLE
  • [5] Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components
    Gerling, Thomas
    Wagenbauer, Klaus F.
    Neuner, Andrea M.
    Dietz, Hendrik
    [J]. SCIENCE, 2015, 347 (6229) : 1446 - 1452
  • [6] He XJ, 2017, NAT MATER, V16, P993, DOI [10.1038/nmat4986, 10.1038/NMAT4986]
  • [7] Polyhedra Self-Assembled from DNA Tripods and Characterized with 3D DNA-PAINT
    Iinuma, Ryosuke
    Ke, Yonggang
    Jungmann, Ralf
    Schlichthaerle, Thomas
    Woehrstein, Johannes B.
    Yin, Peng
    [J]. SCIENCE, 2014, 344 (6179) : 65 - 69
  • [8] Kim J, 2015, NAT NANOTECHNOL, V10, P528, DOI [10.1038/nnano.2015.87, 10.1038/NNANO.2015.87]
  • [9] A light-driven three-dimensional plasmonic nanosystem that translates molecular motion into reversible chiroptical function
    Kuzyk, Anton
    Yang, Yangyang
    Duan, Xiaoyang
    Stoll, Simon
    Govorov, Alexander O.
    Sugiyama, Hiroshi
    Endo, Masayuki
    Liu, Na
    [J]. NATURE COMMUNICATIONS, 2016, 7
  • [10] CHEMICAL SELF-REPLICATION OF PALINDROMIC DUPLEX DNA
    LI, T
    NICOLAOU, KC
    [J]. NATURE, 1994, 369 (6477) : 218 - 221