Cardiovascular informatics: building a bridge to data harmony

被引:5
作者
Caufield, John Harry [1 ,2 ]
Sigdel, Dibakar [1 ,2 ]
Fu, John [1 ]
Choi, Howard [1 ]
Guevara-Gonzalez, Vladimir [1 ]
Wang, Ding [2 ]
Ping, Peipei [1 ,2 ,3 ,4 ,5 ]
机构
[1] Univ Calif Los Angeles UCLA, NHLBI Integrated Cardiovasc Data Sci Training Pro, Suite 1-609,MRL Bldg,675 Charles E Young Dr Sou, Los Angeles, CA 90095 USA
[2] UCLA, Dept Physiol, Sch Med, Suite I-609,MRL Bldg,675 Charles Young Dr South, Los Angeles, CA 90095 USA
[3] UCLA, Dept Med Cardiol, Sch Med, Suite I-609,MRL Bldg,675 Charles Young Dr South, Los Angeles, CA 90095 USA
[4] UCLA, Bioinformat Interdepartmental Program & Med Infor, Suite I-609,MRL Bldg,675 Charles Young Dr South, Los Angeles, CA 90095 USA
[5] UCLA, Scalable Analyt Inst ScAi, Sch Engn, Los Angeles, CA 90095 USA
基金
美国国家卫生研究院;
关键词
Informatics; Data science; Machine learning; Open data; Cloud computing; BIG-DATA; ARTIFICIAL-INTELLIGENCE; HEALTH-CARE; DISEASE; ASSOCIATION; MULTIPLE; MEDICINE; LANGUAGE; PREDICTION; DISCOVERY;
D O I
10.1093/cvr/cvab067
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
The search for new strategies for better understanding cardiovascular (CV) disease is a constant one, spanning multitudinous types of observations and studies. A comprehensive characterization of each disease state and its biomolecular underpinnings relies upon insights gleaned from extensive information collection of various types of data. Researchers and clinicians in CV biomedicine repeatedly face questions regarding which types of data may best answer their questions, how to integrate information from multiple datasets of various types, and how to adapt emerging advances in machine learning and/or artificial intelligence to their needs in data processing. Frequently lauded as a field with great practical and translational potential, the interface between biomedical informatics and CV medicine is challenged with staggeringly massive datasets. Successful application of computational approaches to decode these complex and gigantic amounts of information becomes an essential step toward realizing the desired benefits. In this review, we examine recent efforts to adapt informatics strategies to CV biomedical research: automated information extraction and unification of multifaceted -omics data. We discuss how and why this interdisciplinary space of CV Informatics is particularly relevant to and supportive of current experimental and clinical research. We describe in detail how open data sources and methods can drive discovery while demanding few initial resources, an advantage afforded by widespread availability of cloud computing-driven platforms. Subsequently, we provide examples of how interoperable computational systems facilitate exploration of data from multiple sources, including both consistently formatted structured data and unstructured data. Taken together, these approaches for achieving data harmony enable molecular phenotyping of CV diseases and unification of CV knowledge.
引用
收藏
页码:732 / 745
页数:14
相关论文
共 143 条
[1]   Clinical applications of machine learning in cardiovascular disease and its relevance to cardiac imaging [J].
Al'Aref, Subhi J. ;
Anchouche, Khalil ;
Singh, Gurpreet ;
Slomka, Piotr J. ;
Kolli, Kranthi K. ;
Kumar, Amit ;
Pandey, Mohit ;
Maliakal, Gabriel ;
van Rosendael, Alexander R. ;
Beecy, Ashley N. ;
Berman, Daniel S. ;
Leipsic, Jonathan ;
Nieman, Koen ;
Andreini, Daniele ;
Pontone, Gianluca ;
Schoepf, U. Joseph ;
Shaw, Leslee J. ;
Chang, Hyuk-Jae ;
Narula, Jagat ;
Bax, Jeroen J. ;
Guan, Yuanfang ;
Min, James K. .
EUROPEAN HEART JOURNAL, 2019, 40 (24) :1975-+
[2]   Health checks and cardiovascular risk factor values over six years' follow-up: Matched cohort study using electronic health records in England [J].
Alageel, Samah ;
Gulliford, Martin C. .
PLOS MEDICINE, 2019, 16 (07)
[3]   Democratizing Al [J].
Allen, Bibb ;
Agarwal, Sheela ;
Kalpathy-Cramer, Jayashree ;
Dreyer, Keith .
JOURNAL OF THE AMERICAN COLLEGE OF RADIOLOGY, 2019, 16 (07) :961-963
[4]   LitSense: making sense of biomedical literature at sentence level [J].
Allot, Alexis ;
Chen, Qingyu ;
Kim, Sun ;
Alvarez, Roberto Vera ;
Comeau, Donald C. ;
Wilbur, W. John ;
Lu, Zhiyong .
NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W594-W599
[5]   Using text mining techniques to extract phenotypic information from the PhenoCHF corpus [J].
Alnazzawi, Noha ;
Thompson, Paul ;
Batista-Navarro, Riza ;
Ananiadou, Sophia .
BMC MEDICAL INFORMATICS AND DECISION MAKING, 2015, 15
[6]   Making research articles fit for purpose: structured reporting of key methods and findings [J].
Altman, Douglas G. .
TRIALS, 2015, 16
[7]   Machine Learning Prediction of Mortality and Hospitalization in Heart Failure With Preserved Ejection Fraction [J].
Angraal, Suveen ;
Mortazavi, Bobak J. ;
Gupta, Aakriti ;
Khera, Rohan ;
Ahmad, Tariq ;
Desai, Nihar R. ;
Jacoby, Daniel L. ;
Masoudi, Frederick A. ;
Spertus, John A. ;
Krumholz, Harlan M. .
JACC-HEART FAILURE, 2020, 8 (01) :12-21
[8]   The National Institutes of Health funding for clinical research applying machine learning techniques in 2017 [J].
Annapureddy, Amarnath R. ;
Angraal, Suveen ;
Caraballo, Cesar ;
Grimshaw, Alyssa ;
Huang, Chenxi ;
Mortazavi, Bobak J. ;
Krumholz, Harlan M. .
NPJ DIGITAL MEDICINE, 2020, 3 (01)
[9]   ICD-11 [J].
不详 .
LANCET, 2019, 393 (10188) :2275-2275
[10]  
[Anonymous], LANCET2018, V392