Overcoming the difficulties of predicting conformational polymorph energetics in molecular crystals via correlated wavefunction methods

被引:58
作者
Greenwell, Chandler [1 ]
McKinley, Jessica L. [1 ]
Zhang, Peiyu [2 ]
Zeng, Qun [2 ]
Sun, Guangxu [2 ]
Li, Bochen [2 ]
Wen, Shuhao [2 ]
Beran, Gregory J. O. [1 ]
机构
[1] Univ Calif Riverside, Dept Chem, Riverside, CA 92521 USA
[2] Xtalpi Inc, 245 Main St,12th Floor, Cambridge, MA 02142 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
ACCURATE ENERGY RANKING; DIPOLE DISPERSION MODEL; DER-WAALS INTERACTIONS; GAUSSIAN-BASIS SETS; OXALYL DIHYDRAZIDE; LATTICE ENERGIES; THERMOCHEMISTRY; SYSTEM; PHASE; ROY;
D O I
10.1039/c9sc05689k
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Molecular crystal structure prediction is increasingly being applied to study the solid form landscapes of larger, more flexible pharmaceutical molecules. Despite many successes in crystal structure prediction, van der Waals-inclusive density functional theory (DFT) methods exhibit serious failures predicting the polymorph stabilities for a number of systems exhibiting conformational polymorphism, where changes in intramolecular conformation lead to different intermolecular crystal packings. Here, the stabilities of the conformational polymorphs of o-acetamidobenzamide, ROY, and oxalyl dihydrazide are examined in detail. DFT functionals that have previously been very successful in crystal structure prediction perform poorly in all three systems, due primarily to the poor intramolecular conformational energies, but also due to the intermolecular description in oxalyl dihydrazide. In all three cases, a fragment-based dispersion-corrected second-order Moller-Plesset perturbation theory (MP2D) treatment of the crystals overcomes these difficulties and predicts conformational polymorph stabilities in good agreement with experiment. These results highlight the need for methods which go beyond current-generation DFT functionals to make crystal polymorph stability predictions truly reliable.
引用
收藏
页码:2200 / 2214
页数:15
相关论文
共 137 条
[1]   Adding Anisotropy to the Standard Quasi-Harmonic Approximation Still Fails in Several Ways to Capture Organic Crystal Thermodynamics [J].
Abraham, Nathan S. ;
Shirts, Michael R. .
CRYSTAL GROWTH & DESIGN, 2019, 19 (12) :6911-6924
[2]   Abundant polymorphism in a system with multiple hydrogen-bonding opportunities: Oxalyl dihydrazide [J].
Ahn, Shinbyoung ;
Guo, Fang ;
Kariuki, Benson M. ;
Harris, Kenneth D. M. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (26) :8441-8452
[3]   Photochemically driven shape changes of crystalline organic nanorods [J].
Al-Kaysi, Rabih O. ;
Mueller, Astrid M. ;
Bardeen, Christopher J. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (50) :15938-15939
[4]   Towards crystal structure prediction of complex organic compounds - a report on the fifth blind test [J].
Bardwell, David A. ;
Adjiman, Claire S. ;
Arnautova, Yelena A. ;
Bartashevich, Ekaterina ;
Boerrigter, Stephan X. M. ;
Braun, Doris E. ;
Cruz-Cabeza, Aurora J. ;
Day, Graeme M. ;
Della Valle, Raffaele G. ;
Desiraju, Gautam R. ;
van Eijck, Bouke P. ;
Facelli, Julio C. ;
Ferraro, Marta B. ;
Grillo, Damian ;
Habgood, Matthew ;
Hofmann, Detlef W. M. ;
Hofmann, Fridolin ;
Jose, K. V. Jovan ;
Karamertzanis, Panagiotis G. ;
Kazantsev, Andrei V. ;
Kendrick, John ;
Kuleshova, Liudmila N. ;
Leusen, Frank J. J. ;
Maleev, Andrey V. ;
Misquitta, Alston J. ;
Mohamed, Sharmarke ;
Needs, Richard J. ;
Neumann, Marcus A. ;
Nikylov, Denis ;
Orendt, Anita M. ;
Pal, Rumpa ;
Pantelides, Constantinos C. ;
Pickard, Chris J. ;
Price, Louise S. ;
Price, Sarah L. ;
Scheraga, Harold A. ;
van de Streek, Jacco ;
Thakur, Tejender S. ;
Tiwari, Siddharth ;
Venuti, Elisabetta ;
Zhitkov, Ilia K. .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS, 2011, 67 :535-551
[5]   Ritonavir: An extraordinary example of conformational polymorphism [J].
Bauer, J ;
Spanton, S ;
Henry, R ;
Quick, J ;
Dziki, W ;
Porter, W ;
Morris, J .
PHARMACEUTICAL RESEARCH, 2001, 18 (06) :859-866
[6]   ON THE LARGE-GRADIENT BEHAVIOR OF THE DENSITY FUNCTIONAL EXCHANGE ENERGY [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1986, 85 (12) :7184-7187
[7]   Solid state photodimerization of 9-tert-butyl anthracene ester produces an exceptionally metastable polymorph according to first-principles calculations [J].
Beran, Gregory J. O. .
CRYSTENGCOMM, 2019, 21 (04) :758-764
[8]   Predicting Molecular Crystal Properties from First Principles: Finite Temperature Thermochemistry to NMR Crystallography [J].
Beran, Gregory J. O. ;
Hartman, Joshua D. ;
Heit, Yonaton N. .
ACCOUNTS OF CHEMICAL RESEARCH, 2016, 49 (11) :2501-2508
[9]   Modeling Polymorphic Molecular Crystals with Electronic Structure Theory [J].
Beran, Gregory J. O. .
CHEMICAL REVIEWS, 2016, 116 (09) :5567-5613
[10]   Accurate and Robust Molecular Crystal Modeling Using Fragment-Based Electronic Structure Methods [J].
Beran, Gregory J. O. ;
Wen, Shuhao ;
Nanda, Kaushik ;
Huang, Yuanhang ;
Heit, Yonaton .
PREDICTION AND CALCULATION OF CRYSTAL STRUCTURES: METHODS AND APPLICATIONS, 2014, 345 :59-93