共 84 条
Metabolomics and its application to studying metal toxicity
被引:56
作者:

Booth, Sean C.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calgary, Dept Biol Sci, Fac Sci, Metabol Res Ctr, Calgary, AB T2N 1N4, Canada

Workentine, Matthew L.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calgary, Dept Biol Sci, Fac Sci, Metabol Res Ctr, Calgary, AB T2N 1N4, Canada

Weljie, Aalim M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calgary, Dept Biol Sci, Fac Sci, Metabol Res Ctr, Calgary, AB T2N 1N4, Canada Univ Calgary, Dept Biol Sci, Fac Sci, Metabol Res Ctr, Calgary, AB T2N 1N4, Canada

Turner, Raymond J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calgary, Dept Biol Sci, Fac Sci, Metabol Res Ctr, Calgary, AB T2N 1N4, Canada Univ Calgary, Dept Biol Sci, Fac Sci, Metabol Res Ctr, Calgary, AB T2N 1N4, Canada
机构:
[1] Univ Calgary, Dept Biol Sci, Fac Sci, Metabol Res Ctr, Calgary, AB T2N 1N4, Canada
来源:
关键词:
CADMIUM EXPOSURE;
ENVIRONMENTAL METABOLOMICS;
COMPREHENSIVE ANALYSIS;
H-1-NMR SPECTROSCOPY;
ARABIDOPSIS-THALIANA;
METABOLITE ANALYSIS;
BIOLOGICAL SAMPLES;
DAPHNIA-MAGNA;
RESPONSES;
EXTRACTION;
D O I:
10.1039/c1mt00070e
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Here we explain the omics approach of metabolomics and how it can be applied to study a physiological response to toxic metal exposure. This review aims to educate the metallomics field to the tool of metabolomics. Metabolomics is becoming an increasingly used tool to compare natural and challenged states of various organisms, from disease states in humans to toxin exposure to environmental systems. This approach is key to understanding and identifying the cellular or biochemical targets of metals and the underlying physiological response. Metabolomics steps are described and overviews of its application to metal toxicity to organisms are given. As this approach is very new there are yet only a small number of total studies and therefore only a brief overview of some metal metabolomics studies is described. A frank critical evaluation of the approach is given to provide newcomers to the method a clear idea of the challenges and the rewards of applying metabolomics to their research.
引用
收藏
页码:1142 / 1152
页数:11
相关论文
共 84 条
[1]
Metabolomics analysis II. Preparation of biological samples prior to detection
[J].
Alvarez-Sanchez, B.
;
Priego-Capote, F.
;
Luque de Castro, M. D.
.
TRAC-TRENDS IN ANALYTICAL CHEMISTRY,
2010, 29 (02)
:120-127

Alvarez-Sanchez, B.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cordoba, Dept Analyt Chem, E-14071 Cordoba, Spain

论文数: 引用数:
h-index:
机构:

Luque de Castro, M. D.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cordoba, Dept Analyt Chem, E-14071 Cordoba, Spain
[2]
Metabolomics analysis I. Selection of biological samples and practical aspects preceding sample preparation
[J].
Alvarez-Sanchez, B.
;
Priego-Capote, F.
;
Luque de Castro, M. D.
.
TRAC-TRENDS IN ANALYTICAL CHEMISTRY,
2010, 29 (02)
:111-119

Alvarez-Sanchez, B.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cordoba, Dept Analyt Chem, E-14071 Cordoba, Spain

论文数: 引用数:
h-index:
机构:

Luque de Castro, M. D.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cordoba, Dept Analyt Chem, E-14071 Cordoba, Spain
[3]
TICL - a web tool for network-based interpretation of compound lists inferred by high-throughput metabolomics
[J].
Antonov, Alexey V.
;
Dietmann, Sabine
;
Wong, Philip
;
Mewes, Hans W.
.
FEBS JOURNAL,
2009, 276 (07)
:2084-2094

Antonov, Alexey V.
论文数: 0 引用数: 0
h-index: 0
机构:
Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth GmbH, Inst Bioinformat & Syst Biol, D-85764 Neuherberg, Germany Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth GmbH, Inst Bioinformat & Syst Biol, D-85764 Neuherberg, Germany

Dietmann, Sabine
论文数: 0 引用数: 0
h-index: 0
机构: Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth GmbH, Inst Bioinformat & Syst Biol, D-85764 Neuherberg, Germany

Wong, Philip
论文数: 0 引用数: 0
h-index: 0
机构: Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth GmbH, Inst Bioinformat & Syst Biol, D-85764 Neuherberg, Germany

Mewes, Hans W.
论文数: 0 引用数: 0
h-index: 0
机构:
Tech Univ Munich, Dept Genome Oriented Bioinformat, D-8050 Freising Weihenstephan, Germany Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth GmbH, Inst Bioinformat & Syst Biol, D-85764 Neuherberg, Germany
[4]
Metabolomic analysis of the consequences of cadmium exposure in Silene cucubalus cell cultures via 1H NMR spectroscopy and chemometrics
[J].
Bailey, NJC
;
Oven, M
;
Holmes, E
;
Nicholson, JK
;
Zenk, MH
.
PHYTOCHEMISTRY,
2003, 62 (06)
:851-858

Bailey, NJC
论文数: 0 引用数: 0
h-index: 0
机构: Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England

Oven, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England

Holmes, E
论文数: 0 引用数: 0
h-index: 0
机构: Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England

Nicholson, JK
论文数: 0 引用数: 0
h-index: 0
机构: Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England

Zenk, MH
论文数: 0 引用数: 0
h-index: 0
机构: Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England
[5]
Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach
[J].
Bennett, Bryson D.
;
Yuan, Jie
;
Kimball, Elizabeth H.
;
Rabinowitz, Joshua D.
.
NATURE PROTOCOLS,
2008, 3 (08)
:1299-1311

Bennett, Bryson D.
论文数: 0 引用数: 0
h-index: 0
机构: Princeton Univ, Dept Chem, Princeton, NJ 08544 USA

Yuan, Jie
论文数: 0 引用数: 0
h-index: 0
机构: Princeton Univ, Dept Chem, Princeton, NJ 08544 USA

Kimball, Elizabeth H.
论文数: 0 引用数: 0
h-index: 0
机构: Princeton Univ, Dept Chem, Princeton, NJ 08544 USA

Rabinowitz, Joshua D.
论文数: 0 引用数: 0
h-index: 0
机构:
Princeton Univ, Dept Chem, Princeton, NJ 08544 USA Princeton Univ, Dept Chem, Princeton, NJ 08544 USA
[6]
Differences in Metabolism between the Biofilm and Planktonic Response to Metal Stress
[J].
Booth, Sean C.
;
Workentine, Matthew L.
;
Wen, Jing
;
Shaykhutdinov, Rustem
;
Vogel, Hans J.
;
Ceri, Howard
;
Turner, Raymond J.
;
Weljie, Aalim M.
.
JOURNAL OF PROTEOME RESEARCH,
2011, 10 (07)
:3190-3199

Booth, Sean C.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada

Workentine, Matthew L.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calgary, Biofilm Res Grp, Calgary, AB T2N 1N4, Canada Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada

Wen, Jing
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calgary, Metabol Ctr, Calgary, AB T2N 1N4, Canada Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada

Shaykhutdinov, Rustem
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calgary, Metabol Ctr, Calgary, AB T2N 1N4, Canada Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada

Vogel, Hans J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada
Univ Calgary, Metabol Ctr, Calgary, AB T2N 1N4, Canada Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada

Ceri, Howard
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calgary, Biofilm Res Grp, Calgary, AB T2N 1N4, Canada Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada

Turner, Raymond J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada
Univ Calgary, Biofilm Res Grp, Calgary, AB T2N 1N4, Canada Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada

Weljie, Aalim M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada
Univ Calgary, Metabol Ctr, Calgary, AB T2N 1N4, Canada Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada
[7]
MET-IDEA: Data extraction tool for mass spectrometry-based metabolomics
[J].
Broeckling, Corey D.
;
Reddy, Indira R.
;
Duran, Anthony L.
;
Zhao, Xuechun
;
Sumner, Lloyd W.
.
ANALYTICAL CHEMISTRY,
2006, 78 (13)
:4334-4341

Broeckling, Corey D.
论文数: 0 引用数: 0
h-index: 0
机构:
Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA

Reddy, Indira R.
论文数: 0 引用数: 0
h-index: 0
机构:
Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA

Duran, Anthony L.
论文数: 0 引用数: 0
h-index: 0
机构:
Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA

Zhao, Xuechun
论文数: 0 引用数: 0
h-index: 0
机构:
Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA

Sumner, Lloyd W.
论文数: 0 引用数: 0
h-index: 0
机构:
Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA
[8]
Metabolomics applications of FT-ICR mass spectrometry
[J].
Brown, SC
;
Kruppa, G
;
Dasseux, JL
.
MASS SPECTROMETRY REVIEWS,
2005, 24 (02)
:223-231

Brown, SC
论文数: 0 引用数: 0
h-index: 0
机构: Esper Therapeut Inc, Ann Arbor, MI 48108 USA

Kruppa, G
论文数: 0 引用数: 0
h-index: 0
机构: Esper Therapeut Inc, Ann Arbor, MI 48108 USA

Dasseux, JL
论文数: 0 引用数: 0
h-index: 0
机构: Esper Therapeut Inc, Ann Arbor, MI 48108 USA
[9]
NMR-based metabonomic study of the sub-acute toxicity of titanium dioxide nanoparticles in rats after oral administration
[J].
Bu, Qian
;
Yan, Guangyan
;
Deng, Pengchi
;
Peng, Feng
;
Lin, Hongjun
;
Xu, Youzhi
;
Cao, Zhixing
;
Zhou, Tian
;
Xue, Aiqin
;
Wang, Yanli
;
Cen, Xiaobo
;
Zhao, Ying-Lan
.
NANOTECHNOLOGY,
2010, 21 (12)

Bu, Qian
论文数: 0 引用数: 0
h-index: 0
机构: Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China

Yan, Guangyan
论文数: 0 引用数: 0
h-index: 0
机构:
Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China

Deng, Pengchi
论文数: 0 引用数: 0
h-index: 0
机构:
Sichuan Univ, Analyt & Testing Ctr, Chengdu 610041, Peoples R China Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China

Peng, Feng
论文数: 0 引用数: 0
h-index: 0
机构:
Sichuan Univ, W China Med Sch, Ctr Canc, W China Hosp,Dept Thorac Oncol, Chengdu 610041, Peoples R China Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China

Lin, Hongjun
论文数: 0 引用数: 0
h-index: 0
机构: Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China

Xu, Youzhi
论文数: 0 引用数: 0
h-index: 0
机构: Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China

Cao, Zhixing
论文数: 0 引用数: 0
h-index: 0
机构: Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China

Zhou, Tian
论文数: 0 引用数: 0
h-index: 0
机构: Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China

Xue, Aiqin
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Bioengn, Hangzhou 310018, Peoples R China Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China

Wang, Yanli
论文数: 0 引用数: 0
h-index: 0
机构:
Tianjin Childrens Hosp, Tianjin 300074, Peoples R China Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China

Cen, Xiaobo
论文数: 0 引用数: 0
h-index: 0
机构:
Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China

Zhao, Ying-Lan
论文数: 0 引用数: 0
h-index: 0
机构: Sichuan Univ, W China Med Sch, State Key Lab Biotherapy, W China Hosp,Natl Chengdu Ctr Safety Evaluat Drug, Chengdu 610041, Peoples R China
[10]
'Systems toxicology' approach identifies coordinated metabolic responses to copper in a terrestrial non-model invertebrate, the earthworm Lumbricus rubellus
[J].
Bundy, Jacob G.
;
Sidhu, Jasmin K.
;
Rana, Faisal
;
Spurgeon, David J.
;
Svendsen, Claus
;
Wren, Jodie F.
;
Sturzenbaum, Stephen R.
;
Morgan, A. John
;
Kille, Peter
.
BMC BIOLOGY,
2008, 6 (1)

Bundy, Jacob G.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Surg Oncol Reprod Biol & Anaesthet, Dept Biomol Med, London SW7 2AZ, England Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Surg Oncol Reprod Biol & Anaesthet, Dept Biomol Med, London SW7 2AZ, England

Sidhu, Jasmin K.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Surg Oncol Reprod Biol & Anaesthet, Dept Biomol Med, London SW7 2AZ, England Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Surg Oncol Reprod Biol & Anaesthet, Dept Biomol Med, London SW7 2AZ, England

Rana, Faisal
论文数: 0 引用数: 0
h-index: 0
机构: Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Surg Oncol Reprod Biol & Anaesthet, Dept Biomol Med, London SW7 2AZ, England

Spurgeon, David J.
论文数: 0 引用数: 0
h-index: 0
机构:
Ctr Ecol & Hydrol, Huntingdon PE28 2LS, England Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Surg Oncol Reprod Biol & Anaesthet, Dept Biomol Med, London SW7 2AZ, England

Svendsen, Claus
论文数: 0 引用数: 0
h-index: 0
机构:
Ctr Ecol & Hydrol, Huntingdon PE28 2LS, England Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Surg Oncol Reprod Biol & Anaesthet, Dept Biomol Med, London SW7 2AZ, England

Wren, Jodie F.
论文数: 0 引用数: 0
h-index: 0
机构:
Cardiff Univ, Sch Biosci, Cardiff CF10 3TL, Wales
Univ Bristol, Sch Biol Sci, Bristol BS8 1UG, Avon, England Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Surg Oncol Reprod Biol & Anaesthet, Dept Biomol Med, London SW7 2AZ, England

Sturzenbaum, Stephen R.
论文数: 0 引用数: 0
h-index: 0
机构:
Kings Coll London, Div Pharmaceut Sci, Sch Biomed & Hlth Sci, London SE1 9NH, England Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Surg Oncol Reprod Biol & Anaesthet, Dept Biomol Med, London SW7 2AZ, England

Morgan, A. John
论文数: 0 引用数: 0
h-index: 0
机构:
Cardiff Univ, Sch Biosci, Cardiff CF10 3TL, Wales Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Surg Oncol Reprod Biol & Anaesthet, Dept Biomol Med, London SW7 2AZ, England

Kille, Peter
论文数: 0 引用数: 0
h-index: 0
机构: Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Surg Oncol Reprod Biol & Anaesthet, Dept Biomol Med, London SW7 2AZ, England