Combinatorial biosynthesis of polyketides - a perspective

被引:99
作者
Wong, Fong T. [1 ]
Khosla, Chaitan [1 ,2 ]
机构
[1] Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
[2] Stanford Univ, Dept Chem, Stanford, CA 94305 USA
关键词
MOLECULAR RECOGNITION; INTERMODULAR COMMUNICATION; NATURAL-PRODUCTS; GENE CLUSTERS; SYNTHASE; DOMAIN; IDENTIFICATION; SPECIFICITY; ANNOTATION; PREDICTION;
D O I
10.1016/j.cbpa.2012.01.018
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Since their discovery, polyketide synthases have been attractive targets of biosynthetic engineering to make 'unnatural' natural products. Although combinatorial biosynthesis has made encouraging advances over the past two decades, the field remains in its infancy. In this enzymecentric perspective, we discuss the scientific and technological challenges that could accelerate the adoption of combinatorial biosynthesis as a method of choice for the preparation of encoded libraries of bioactive small molecules. Borrowing a page from the protein structure prediction community, we propose a periodic challenge program to vet the most promising methods in the field, and to foster the collective development of useful tools and algorithms.
引用
收藏
页码:117 / 123
页数:7
相关论文
共 46 条
[1]   SBSPKS: structure based sequence analysis of polyketide synthases [J].
Anand, Swadha ;
Prasad, M. V. R. ;
Yadav, Gitanjali ;
Kumar, Narendra ;
Shehara, Jyoti ;
Ansari, Md. Zeeshan ;
Mohanty, Debasisa .
NUCLEIC ACIDS RESEARCH, 2010, 38 :W487-W496
[2]  
BAI RL, 1993, MOL PHARMACOL, V44, P757
[3]   Programming of Erythromycin Biosynthesis by a Modular Polyketide Synthase [J].
Cane, David E. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (36) :27517-27523
[4]   TYPE I POLYKETIDE SYNTHASES THAT REQUIRE DISCRETE ACYLTRANSFERASES [J].
Cheng, Yi-Qiang ;
Coughlin, Jane M. ;
Lim, Si-Kyu ;
Shen, Ben .
COMPLEX ENZYMES IN MICROBIAL NATURAL PRODUCT BIOSYNTHESIS, PART B: POLYKETIDES, AMINOCOUMARINS AND CARBOHYDRATES, 2009, 459 :165-186
[5]   Molecular recognition of diketide substrates by a beta-ketoacyl-acyl carrier protein synthase domain within a bimodular polyketide synthase [J].
Chuck, JA ;
McPherson, M ;
Huang, H ;
Jacobsen, JR ;
Khosla, C ;
Cane, DE .
CHEMISTRY & BIOLOGY, 1997, 4 (10) :757-766
[6]   New insights into the formation of fungal aromatic polyketides [J].
Crawford, Jason M. ;
Townsend, Craig A. .
NATURE REVIEWS MICROBIOLOGY, 2010, 8 (12) :879-889
[7]   'Omics' of natural products and redox biology Editorial overview [J].
Dorrestein, Pieter C. ;
Carroll, Kate S. .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2011, 15 (01) :3-4
[8]   DNA assembly for synthetic biology: from parts to pathways and beyond [J].
Ellis, Tom ;
Adie, Tom ;
Baldwin, Geoff S. .
INTEGRATIVE BIOLOGY, 2011, 3 (02) :109-118
[9]   Rational Domain Swaps Decipher Programming in Fungal Highly Reducing Polyketide Synthases and Resurrect an Extinct Metabolite [J].
Fisch, Katja M. ;
Bakeer, Walid ;
Yakasai, Ahmed A. ;
Song, Zhongshu ;
Pedrick, Jennifer ;
Wasil, Zahida ;
Bailey, Andrew M. ;
Lazarus, Colin M. ;
Simpson, Thomas J. ;
Cox, Russell J. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (41) :16635-16641
[10]   Development of practical syntheses of the marine anticancer agents discodermolide and dictyostatin [J].
Florence, Gordon J. ;
Gardner, Nicola M. ;
Paterson, Ian .
NATURAL PRODUCT REPORTS, 2008, 25 (02) :342-375