NCBI Taxonomy: a comprehensive update on curation, resources and tools

被引：1237

作者：

Schoch, Conrad L. ^{[1
]}

Ciufo, Stacy ^{[1
]}

Domrachev, Mikhail ^{[1
]}

Hotton, Carol L. ^{[1
]}

Kannan, Sivakumar ^{[1
]}

Khovanskaya, Rogneda ^{[1
]}

Leipe, Detlef ^{[1
]}

Mcveigh, Richard ^{[1
]}

O'Neill, Kathleen ^{[1
]}

Robbertse, Barbara ^{[1
]}

Sharma, Shobha ^{[1
]}

Soussov, Vladimir ^{[1
]}

Sullivan, John P. ^{[1
]}

Sun, Lu ^{[1
]}

Turner, Sean ^{[1
]}

Karsch-Mizrachi, Ilene ^{[1
]}

机构：

[1] NLM, NIH, Natl Ctr Biotechnol Informat, 9600 Rockville Pike, Bethesda, MD 20892 USA

来源：

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | 2020年

基金：

美国国家卫生研究院;

关键词：

CLASSIFICATION; NAMES; DNA; BIODIVERSITY; BARCODE;

D O I：

10.1093/database/baaa062

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The National Center for Biotechnology Information (NCBI) Taxonomy includes organism names and classifications for every sequence in the nucleotide and protein sequence databases of the International Nucleotide Sequence Database Collaboration. Since the last review of this resource in 2012, it has undergone several improvements. Most notable is the shift from a single SQL database to a series of linked databases tied to a framework of data called NameBank. This means that relations among data elements can be adjusted in more detail, resulting in expanded annotation of synonyms, the ability to flag names with specific nomenclatural properties, enhanced tracking of publications tied to names and improved annotation of scientific authorities and types. Additionally, practices utilized by NCBI Taxonomy curators specific to major taxonomic groups are described, terms peculiar to NCBI Taxonomy are explained, external resources are acknowledged and updates to tools and other resources are documented.

引用

页数：21

共 87 条

[71]

Laumer C.E., 2019, P R SOC B, V286

[72]

Lepage D., 2020, AVIBASE WORLD BIRD D

[73]

Mora C., 2011, PLOS BIOL, V9

[74]

NCTC, 2020, NAT COLL TYP CULT NC

[75]

Neave S.A., 1939, FOREWORD NOMENCLATOR, V1

[76]

OSullivan C., 2017, BIOINFORMATICS, V1, P79, DOI [10.1007/978-1-4939-6622-6_4, DOI 10.1007/978-1-4939-6622-6_4]

[77]

Robbertse B., 2017, DATABASE, V2017

[78]

Roskov Y., 2020, Species 2000 & IT IS catalogue of life

[79]

Sayers EW, 2020, NUCLEIC ACIDS RES, V48, pD84, DOI [10.1093/nar/gkaa1023, 10.1093/nar/gkz956, 10.1093/nar/gky989]

[80]

Schoch C.L., 2014, DATABASE, V2014

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