Testing the mutual information expansion of entropy with multivariate Gaussian distributions

被引:8
|
作者
Goethe, Martin [1 ]
Fita, Ignacio [2 ]
Miguel Rubi, J. [1 ]
机构
[1] Univ Barcelona, Dept Condensed Matter Phys, Carrer Marti & Franques 1, E-08028 Barcelona, Spain
[2] CSIC, Mol Biol Inst Barcelona IBMB, Maria Maeztu Unit Excellence, Carrer Baldiri Reixac 4-8, E-08028 Barcelona, Spain
来源
JOURNAL OF CHEMICAL PHYSICS | 2017年 / 147卷 / 22期
关键词
CONFIGURATIONAL ENTROPY; CONFORMATIONAL ENTROPY; EFFICIENT CALCULATION; VIBRATIONAL ENTROPY; MOLECULAR-DYNAMICS; PROTEIN DYNAMICS; FLUCTUATIONS; SIMULATIONS;
D O I
10.1063/1.4996847
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The mutual information expansion (MIE) represents an approximation of the configurational entropy in terms of low-dimensional integrals. It is frequently employed to compute entropies from simulation data of large systems, such as macromolecules, for which brute-force evaluation of the full configurational integral is intractable. Here, we test the validity of MIE for systems consisting of more than m = 100 degrees of freedom (dofs). The dofs are distributed according to multivariate Gaussian distributions which were generated from protein structures using a variant of the anisotropic network model. For the Gaussian distributions, we have semi-analytical access to the configurational entropy as well as to all contributions of MIE. This allows us to accurately assess the validity of MIE for different situations. We find that MIE diverges for systems containing long-range correlations which means that the error of consecutive MIE approximations grows with the truncation order n for all tractable n << m. This fact implies severe limitations on the applicability of MIE, which are discussed in the article. For systems with correlations that decay exponentially with distance, MIE represents an asymptotic expansion of entropy, where the first successive MIE approximations approach the exact entropy, while MIE also diverges for larger orders. In this case, MIE serves as a useful entropy expansion when truncated up to a specific truncation order which depends on the correlation length of the system. Published by AIP Publishing.
引用
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页数:9
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