Large-scale ab initio simulations for periodic system

被引:27
作者
Shao, Xuecheng [1 ,2 ]
Xu, Qiang [1 ,2 ]
Wang, Sheng [1 ,2 ]
Lv, Jian [1 ,2 ,3 ]
Wang, Yanchao [1 ,2 ]
Ma, Yanming [1 ,2 ]
机构
[1] Jilin Univ, Coll Phys, State Key Lab Superhard Mat, Changchun 130012, Jilin, Peoples R China
[2] Jilin Univ, Coll Phys, Innovat Ctr Computat Phys Methods & Software, Changchun, Jilin, Peoples R China
[3] Jilin Univ, Coll Mat Sci & Engn, Changchun 130012, Jilin, Peoples R China
基金
中国国家自然科学基金;
关键词
OF-DFT; Molecular dynamics; Parallel; ATLAS; PARTICLE MESH EWALD; MOLECULAR-DYNAMICS; CHALLENGES; SCATTERING;
D O I
10.1016/j.cpc.2018.07.009
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
In this manuscript, we present new capabilities and implementations on massively parallel computers of our ab initio orbital-free density functional theory software (ATLAS). In addition to the electronic ground-state capabilities, the extensive structure-related functionalities including geometrical structure relaxation and molecular dynamics simulation have been implemented in the new version of ATLAS. The effectiveness of these extensions is assessed through simulations of nanocrystalline and warm dense Al. The simulated results agree excellently with previous experimental and theoretical data, validating new capabilities. Furthermore, new version of ATLAS exploiting the massively parallel implementation with message passing interface shows high efficiency, as exemplified by its ability to simulate a system containing 4 million atoms only taking less than 1 h with 2048 processors. The scalable parallel implementation of the ATLAS package with extensive capabilities holds considerable promise for simulation of large-scale systems with millions of atoms. (C) 2018 Elsevier B.V. All rights reserved.
引用
收藏
页码:78 / 83
页数:6
相关论文
共 42 条
[1]   MOLECULAR-DYNAMICS SIMULATIONS AT CONSTANT PRESSURE AND-OR TEMPERATURE [J].
ANDERSEN, HC .
JOURNAL OF CHEMICAL PHYSICS, 1980, 72 (04) :2384-2393
[2]  
[Anonymous], 1999, SPRINGER SCI
[3]  
[Anonymous], 1987, Unconstrained Optimization: Practical Methods of Optimization
[4]   Structural relaxation made simple [J].
Bitzek, Erik ;
Koskinen, Pekka ;
Gaehler, Franz ;
Moseler, Michael ;
Gumbsch, Peter .
PHYSICAL REVIEW LETTERS, 2006, 97 (17)
[5]   Challenges in modeling materials properties without experimental input [J].
Carter, Emily A. .
SCIENCE, 2008, 321 (5890) :800-803
[6]   Curved-line search algorithm for ab initio atomic structure relaxation [J].
Chen, Zhanghui ;
Li, Jingbo ;
Li, Shushen ;
Wang, Lin-Wang .
PHYSICAL REVIEW B, 2017, 96 (11)
[7]   Evidence for out-of-equilibrium states in warm dense matter probed by x-ray Thomson scattering [J].
Clerouin, Jean ;
Robert, Gregory ;
Arnault, Philippe ;
Ticknor, Christopher ;
Kress, Joel D. ;
Collins, Lee A. .
PHYSICAL REVIEW E, 2015, 91 (01)
[8]   ELECTRON-ION SCATTERING IN DENSE MULTI-COMPONENT PLASMAS: APPLICATION TO THE OUTER CRUST OF AN ACCRETING NEUTRON STAR [J].
Daligault, J. ;
Gupta, S. .
ASTROPHYSICAL JOURNAL, 2009, 703 (01) :994-1011
[9]   PARTICLE MESH EWALD - AN N.LOG(N) METHOD FOR EWALD SUMS IN LARGE SYSTEMS [J].
DARDEN, T ;
YORK, D ;
PEDERSEN, L .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (12) :10089-10092
[10]   A SMOOTH PARTICLE MESH EWALD METHOD [J].
ESSMANN, U ;
PERERA, L ;
BERKOWITZ, ML ;
DARDEN, T ;
LEE, H ;
PEDERSEN, LG .
JOURNAL OF CHEMICAL PHYSICS, 1995, 103 (19) :8577-8593