Multi-core desktop processors make possible real-time electron tomography

被引:2
作者
Agulleiro, J. I. [1 ]
Garzon, E. M. [1 ]
Garcia, I. [2 ]
Fernandez, J. J. [3 ]
机构
[1] Univ Almeria, Dept Comp Architecture & Elect, Almeria 04120, Spain
[2] Univ Malaga, Dept Comp Architecture, E-29071 Malaga, Spain
[3] CSIC, Natl Ctr Biotechnol, Madrid 28049, Spain
来源
PROCEEDINGS OF THE 19TH INTERNATIONAL EUROMICRO CONFERENCE ON PARALLEL, DISTRIBUTED, AND NETWORK-BASED PROCESSING | 2011年
关键词
Electron tomography; multi-core; real-time; vectorization; BIOLOGICAL SPECIMENS; RECONSTRUCTION;
D O I
10.1109/PDP.2011.36
中图分类号
TP3 [计算技术、计算机技术];
学科分类号
0812 ;
摘要
Electron tomography (ET) allows elucidation of the three-dimensional (3D) structure of large complex biological specimens at molecular resolution. In order to achieve such resolution levels, large projection images have to be used to compute the 3D reconstructions. Tomographic reconstruction on this scale requires a tremendous use of computational resources and considerable processing time. Traditionally, parallel and distributed systems, and more recently GPUs, have been the key to cope with this demanding procedure. This work demonstrates that full exploitation of the impressive processing power within modern multi-core processors make them a feasible alternative. The use of parallel computing, vectorization and code optimization allows ultra-fast tomographic reconstructions on standard computers, even outperforming GPUs. Our results confirm that modern processors succeed in providing reconstructed volumes in very little time, which enables them for real-time ET.
引用
收藏
页码:127 / 132
页数:6
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