LRP1B Polymorphisms Are Associated with Multiple Myeloma Risk in a Chinese Han Population

被引:8
作者
Li, Bingjie [1 ]
Liu, Chenxi [2 ,3 ]
Cheng, Guixue [4 ]
Peng, Mengle [1 ]
Qin, Xiaosong [4 ]
Liu, Yong [4 ]
Li, Yongzhe [2 ,3 ]
Qin, Dongchun [1 ]
机构
[1] Zhengzhou Univ, Affiliated Hosp 1, Dept Clin Lab, Key Lab Lab Med Henan Prov, Zhengzhou 450052, Henan, Peoples R China
[2] Chinese Acad Med Sci, Peking Union Med Coll Hosp, Dept Clin Lab, Beijing 100730, Peoples R China
[3] Peking Union Med Coll, Beijing 100730, Peoples R China
[4] China Med Univ, Shengjing Hosp, Dept Lab Med, Shenyang 110004, Liaoning, Peoples R China
基金
中国国家自然科学基金;
关键词
multiple myeloma; LRP1B; susceptibility; linkage disequilibrium; mutation; DOWN-REGULATION; DISEASE; MIGRATION; GENE;
D O I
10.7150/jca.28905
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Multiple myeloma (MM) is an extremely complex plasma cell malignancy that is genetically heterogeneous. A recent Genome-wide association study (GWAS) indicated that variation at 2q22 (rs61070260) influences MM risk. This association has not been validated to date in a Chinese Han population. In this study, we evaluated the association between rs61070260 in LRP1B and MM risk in a Chinese Han population involving 739 MM patients and 592 healthy controls. Our results indicated that rs61070260 in LRP1B was significantly associated with MM susceptibility (P=3.937x10(-37)). Furthermore, the linkage disequilibrium (LD) analysis of rs61070260 revealed an LD block encompassing exons 26, 27 and 28 of the LRP1B gene, and a subsequent sequencing analysis identified three SNPs (rs762074421, rs756168629, rs113600691) in exons 26 and 28 of LRP1B. For the SNP rs756168629 in exon 26, a missense mutation which results in a transition from arginine to histidine at position 1661 of the LRP1B protein, has not been found in Chinese populations according to the Chinese Millionome Database and Genome Aggregation Database (EAS), and this mutation was predicted to be deleterious or damaging by SIFT and PolyPhen. These findings firmly establish the role of LRP1B in contributing to MM susceptibility. In addition, the identification of a rare coding mutation (p.R1661H) in LRP1B detected in MM individuals was suggested to be harmful to the encoded protein, which was characterized as a candidate tumour suppressor; thus, LRP1B is likely to be a disease-associated gene that is implicated in the development and progression of MM.
引用
收藏
页码:577 / 582
页数:6
相关论文
共 30 条
[1]  
Adzhubei Ivan, 2013, Curr Protoc Hum Genet, VChapter 7, DOI 10.1002/0471142905.hg0720s76
[2]  
Alliey-Rodriguez N., 2017, COMMON VARIANTS NRXN, DOI [10.1101/175489, DOI 10.1101/175489]
[3]   Deep Resequencing of GWAS Loci Identifies Rare Variants in CARD9, IL23R and RNF186 That Are Associated with Ulcerative Colitis [J].
Beaudoin, Melissa ;
Goyette, Philippe ;
Boucher, Gabrielle ;
Lo, Ken Sin ;
Rivas, Manuel A. ;
Stevens, Christine ;
Alikashani, Azadeh ;
Ladouceur, Martin ;
Ellinghaus, David ;
Torkvist, Leif ;
Goel, Gautam ;
Lagace, Caroline ;
Annese, Vito ;
Bitton, Alain ;
Begun, Jakob ;
Brant, Steve R. ;
Bresso, Francesca ;
Cho, Judy H. ;
Duerr, Richard H. ;
Halfvarson, Jonas ;
McGovern, Dermot P. B. ;
Radford-Smith, Graham ;
Schreiber, Stefan ;
Schumm, Philip L. ;
Sharma, Yashoda ;
Silverberg, Mark S. ;
Weersma, Rinse K. ;
D'Amato, Mauro ;
Vermeire, Severine ;
Franke, Andre ;
Lettre, Guillaume ;
Xavier, Ramnik J. ;
Daly, Mark J. ;
Rioux, John D. .
PLOS GENETICS, 2013, 9 (09)
[4]   Understanding Biology to Tackle the Disease: Multiple Myeloma From Bench to Bedside, and Back [J].
Bianchi, Giada ;
Anderson, Kenneth C. .
CA-A CANCER JOURNAL FOR CLINICIANS, 2014, 64 (06) :422-444
[5]  
Brautigam Michelle, 2018, Praxis (Bern 1994), V107, P749, DOI 10.1024/1661-8157/a002984
[6]   Association between Variants in Atopy-Related Immunologic Candidate Genes and Pancreatic Cancer Risk [J].
Cotterchio, Michelle ;
Lowcock, Elizabeth ;
Bider-Canfield, Zoe ;
Lemire, Mathieu ;
Greenwood, Celia ;
Gallinger, Steven ;
Hudson, Thomas .
PLOS ONE, 2015, 10 (05)
[7]   Potential etiologic and functional implications of genome-wide association loci for human diseases and traits [J].
Hindorff, Lucia A. ;
Sethupathy, Praveen ;
Junkins, Heather A. ;
Ramos, Erin M. ;
Mehta, Jayashri P. ;
Collins, Francis S. ;
Manolio, Teri A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (23) :9362-9367
[8]   Genome-wide association study identifies variation at 6q25.1 associated with survival in multiple myeloma [J].
Johnson, David C. ;
Weinhold, Niels ;
Mitchell, Jonathan S. ;
Chen, Bowang ;
Kaiser, Martin ;
Begum, Dil B. ;
Hillengass, Jens ;
Bertsch, Uta ;
Gregory, Walter A. ;
Cairns, David ;
Jackson, Graham H. ;
Foersti, Asta ;
Nickel, Jolanta ;
Hoffmann, Per ;
Noeethen, Markus M. ;
Stephens, Owen W. ;
Barlogie, Bart ;
Davis, Faith E. ;
Hemminki, Kari ;
Goldschmidt, Hartmut ;
Houlston, Richard S. ;
Morgan, Gareth J. .
NATURE COMMUNICATIONS, 2016, 7
[9]   Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm [J].
Kumar, Prateek ;
Henikoff, Steven ;
Ng, Pauline C. .
NATURE PROTOCOLS, 2009, 4 (07) :1073-1082
[10]   Criteria for diagnosis, staging, risk stratification and response assessment of multiple myeloma [J].
Kyle, R. A. ;
Rajkumar, S. V. .
LEUKEMIA, 2009, 23 (01) :3-9