Forecasting the number of species of asexually reproducing fungi (Ascomycota and Basidiomycota)

被引:47
作者
Wijayawardene, Nalin N. [1 ,2 ]
Phillips, Alan J. L. [3 ]
Pereira, Diana Santos [3 ]
Dai, Dong-Qin [1 ]
Aptroot, Andre [4 ]
Monteiro, Josiane S. [5 ]
Druzhinina, Irina S. [6 ]
Cai, Feng [6 ]
Fan, Xinlei [7 ]
Selbmann, Laura [8 ,9 ]
Coleine, Claudia [8 ]
Castaneda-Ruiz, Rafael F. [10 ]
Kukwa, Martin [11 ]
Flakus, Adam [12 ]
Fiuza, Patricia Oliveira [13 ]
Kirk, Paul M. [14 ]
Kumar, Kunhiraman C. Rajesh [15 ]
Ieperuma Arachchi, Ilesha S. [16 ]
Suwannarach, Nakarin [17 ]
Tang, Li-Zhou [1 ]
Boekhout, Teun [18 ,19 ,20 ]
Tan, Chen Shuhui [20 ]
Jayasinghe, R. P. Prabath K. [21 ]
Thines, Marco [22 ,23 ]
机构
[1] Qujing Normal Univ, Coll Biol Resource & Food Engn, Ctr Yunnan Plateau Biol Resources Protect & Utili, Qujing 655011, Yunnan, Peoples R China
[2] Inst Res & Dev Hlth & Social Care, Sect Genet, 393-3 Lily Ave, Battaramulla 10120, Sri Lanka
[3] Univ Lisbon, Biosyst & Integrat Sci Inst BioISI, Fac Ciencias, P-1749016 Lisbon, Portugal
[4] Univ Fed Mato Grosso do Sul, Inst Biociencias, Lab Bot Liquenol, Ave Costa & Silva S-N, BR-79070900 Campo Grande, MS, Brazil
[5] Museu Paraense Emilio Goeldi, Coordinat Bot, BR-66077830 Belem, PA, Brazil
[6] Nanjing Agr Univ, Coll Resources & Environm Sci, Fungal Genom Lab FungiG, Weigang 1, Nanjing 210095, Jiangsu, Peoples R China
[7] Beijing Forestry Univ, Minist Educ, Key Lab Silviculture & Conservat, Beijing 100083, Peoples R China
[8] Univ Tuscia, Dept Ecol & Biol Sci, Viterbo, Italy
[9] Italian Natl Antarct Museum MNA, Mycol Sect, Genoa, Italy
[10] Inst Invest Fundament Agr Trop, Alejandro Humboldt INIFAT, Havana, Cuba
[11] Univ Gdansk, Fac Biol, Dept Plant Taxon & Nat Conservat, Wita Stwosza 59, PL-80308 Gdansk, Poland
[12] Polish Acad Sci, W Szafer Inst Bot, Lubicz 46, PL-31512 Krakow, Poland
[13] Univ Fed Rio Grande Norte UFRN, Programa Posgrad Sistemat & Evolucao, Ctr Biociencias, Campus Univ,Av Senador Salgado Filho 3000, BR-59078970 Natal, RN, Brazil
[14] Royal Bot Gardens, Jodrell Lab, Biodivers Informat & Spatial Anal, Richmond TW9 3DS, Surrey, England
[15] MACS Agharkar Res Inst, Biodivers & Palaeobiol Grp, Natl Fungal Culture Collect India NFCCI, GG Agarkar Rd, Pune 411004, Maharashtra, India
[16] Univ New Brunswick, Dept Biol, Brunswick, NB, Canada
[17] Chiang Mai Univ, Res Ctr Microbial Div & Sustainable Utilizat, Fac Sci, Chiang Mai 50200, Thailand
[18] Westerdijk Inst Fungal Biodivers, Uppsalalaan 8, NL-3584 CT Utrecht, Netherlands
[19] Univ Amsterdam, Inst Biodivers & Ecosyst Dynam IBED, Sci Pk 904, NL-1098 XH Amsterdam, Netherlands
[20] Yeasts Fdn, Houten, Netherlands
[21] Natl Aquat Resources Res & Dev Agcy NARA, Colombo 01500 15, Sri Lanka
[22] Goethe Univ, Inst Ecol Evolut & Divers, Dept Biol Sci, Max vonLaue Str 13, D-60486 Frankfurt, Germany
[23] Senckenberg Biodivers & Climate Res Ctr, Senckenberganlage 25, D-60325 Frankfurt, Germany
基金
中国国家自然科学基金;
关键词
Cryptic species; DNA sequences; Morphology; Pleomorphism; Speciose genera; Species identification; ROCK-INHABITING FUNGI; DNA-SEQUENCE-DATA; LEAF-LITTER; LICHENICOLOUS FUNGI; AMBROSIA BEETLE; GENERIC NAMES; BLACK FUNGI; RAIN-FOREST; SP-NOV; MULTIGENE ANALYSIS;
D O I
10.1007/s13225-022-00500-5
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Asexually reproducing fungi play a significant role in essential processes in managed and wild ecosystems such as nutrients cycling and multitrophic interactions. A large number of such taxa are among the most notorious plant and animal pathogens. In addition, they have a key role in food production, biotechnology and medicine. Taxa without or rare sexual reproduction are distinguished based on their sporulating structures and conidiomata in traditional morphology-based taxonomy. The number, variation and diversity of asexually reproducing taxa are insufficiently known, even though fungi capable of asexual reproduction may provide an untapped, rich biological resource for future exploitation. Currently, ca. 30,000 asexual species belonging to ca. 3800 genera have been reported (including 1388 coelomycetous and 2265 hyphomycetous genera). Recent reports (2017-2020) reiterate that the number of asexually producing fungi is higher than the number of frequently sexually-reproducing fungi. With the advent of molecular tools and the abandonment of the dual nomenclature system for pleomorphic fungi, priority criteria were established and revisited in the latest outline of fungi and fungus-like taxa. However, species numbers and taxonomic boundaries of pleomorphic taxa and their synanamorphs or synasexual morphs have yet to be addressed. The number of species of speciose genera (e.g. Alternaria, Aspergillus, Cercospora, Fusarium, Phoma and Pseudocercospora), cryptic species, species of pleomorphic genera, less studied life modes (such as lichenicolous taxa, taxa from extreme environments) and species from biodiversity-rich areas still need evaluation to achieve more reliable estimates of their diversity. This paper discusses the current knowledge on the matter, with diversity estimates, and potential obstacles in several chapters on (1) speciose genera; (2) pleomorphic genera; (3) cryptic species; (4) well-studied but insufficiently resolved taxa, e.g. leaf inhabiting species, marine fungi, (5) less studied life modes, e.g. lichenicolous, rock-inhabiting fungi, insect-associated and yeast-forming taxa and (6) species from biodiversity-rich areas.
引用
收藏
页码:463 / 490
页数:28
相关论文
共 321 条
[1]  
Abbas SQ, 2004, PAK J BOT, V36, P209
[2]   Metabarcoding on both environmental DNA and RNA highlights differences between fungal communities sampled in different habitats [J].
Adamo, Martino ;
Voyron, Samuele ;
Chialva, Matteo ;
Marmeisse, Roland ;
Girlanda, Mariangela .
PLOS ONE, 2020, 15 (12)
[3]   Cytospora species (Ascomycota, Diaporthales, Valsaceae):: introduced and native pathogens of trees in South Africa [J].
Adams, G. C. ;
Roux, J. ;
Wingfield, M. J. .
AUSTRALASIAN PLANT PATHOLOGY, 2006, 35 (05) :521-548
[4]  
Adams G C., 2005, Studies in Mycology, V52, P1
[5]   Starmerella orientalis f.a., sp nov., an ascomycetous yeast species isolated from flowers [J].
Alimadadi, Nayyereh ;
Soudi, Mohammad Reza ;
Wang, Shi-An ;
Wang, Qi-Ming ;
Talebpour, Zahra ;
Bai, Feng-Yan .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :1476-1481
[6]  
Alves A, 2008, FUNGAL DIVERS, V28, P1
[7]   The complex of Diplodia species associated with Fraxinus and some other woody hosts in Italy and Portugal [J].
Alves, A. ;
Linaldeddu, B. T. ;
Deidda, A. ;
Scanu, B. ;
Phillips, A. J. L. .
FUNGAL DIVERSITY, 2014, 67 (01) :143-156
[8]   Fungi in the Marine Environment: Open Questions and Unsolved Problems [J].
Amend, Anthony ;
Burgaud, Gaetan ;
Cunliffe, Michael ;
Edgcomb, Virginia P. ;
Ettinger, Cassandra L. ;
Gutierrez, M. H. ;
Heitman, Joseph ;
Hom, Erik F. Y. ;
Ianiri, Giuseppe ;
Jones, Adam C. ;
Kagami, Maiko ;
Picard, Kathryn T. ;
Quandt, C. Alisha ;
Raghukumar, Seshagiri ;
Riquelme, Mertixell ;
Stajich, Jason ;
Vargas-Muniz, Jose ;
Walker, Allison K. ;
Yarden, Oded ;
Gladfelter, Amy S. .
MBIO, 2019, 10 (02)
[9]   Phylogenetic relationships of rock-inhabiting black fungi belonging to the widespread genera Lichenothelia and Saxomyces [J].
Ametrano, Claudio G. ;
Knudsen, Kerry ;
Kocourkova, Jana ;
Grube, Martin ;
Selbmann, Laura ;
Muggia, Lucia .
MYCOLOGIA, 2019, 111 (01) :127-160
[10]  
[Anonymous], 2003, Herzogia