Diagnostic Utility of Whole Exome Sequencing in the Neuromuscular Clinic

被引:30
作者
Waldrop, Megan A. [1 ,2 ,3 ]
Pastore, Matthew [3 ,4 ]
Schrader, Rachel [1 ,2 ,3 ]
Sites, Emily [3 ,4 ]
Bartholomew, Dennis [3 ,4 ]
Tsao, Chang-Yong [2 ,3 ]
Flanigan, Kevin M. [1 ,2 ,3 ]
机构
[1] Nationwide Childrens Hosp, Ctr Gene Therapy, 700 Childrens Dr,WA3013, Columbus, OH 43205 USA
[2] Nationwide Childrens Hosp, Dept Pediat & Neurol, Columbus, OH 43205 USA
[3] Ohio State Univ, Columbus, OH 43210 USA
[4] Nationwide Childrens Hosp, Dept Pediat & Clin Genet, Columbus, OH 43205 USA
基金
美国国家卫生研究院;
关键词
whole exome sequencing; neuromuscular; hypotonia; diagnostic odyssey; CONGENITAL MYOPATHIES; VICI SYNDROME; MUTATIONS; DISORDERS; PHENOTYPES; CHILDREN; DISEASES;
D O I
10.1055/s-0039-1677734
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Next-generation sequencing is a powerful diagnostic tool, yet it has proven inadequate to establish a diagnosis in all cases of congenital hypotonia or childhood onset weakness. We sought to describe the impact of whole exome sequencing (WES), which has only recently become widely available clinically, on molecular diagnosis in the Nationwide Children's Hospital Neuromuscular clinics. We reviewed records of all patients in our clinic with pediatric onset of symptoms who had WES done since 2013. Patients were included if clinical suspicion was high for a neuromuscular disease. Clinical WES was performed in 30 families, representing 31 patients, all of whom were seen for hypotonia, weakness, or gait disturbance. Probands had between 2 and 12 genetic diagnostic tests prior to obtaining WES. A genetic diagnosis was established in 11 families (37%), and in 12 patients (39%), with mutations in 10 different genes. Five of these genes have only been associated with disease since 2013, and were not previously represented on clinically available disease gene panels. Our results confirm the utility of WES in the clinical setting, particularly for genetically heterogeneous syndromes. The availability of WES can provide an end to the diagnostic odyssey for parents and allow for expansion of phenotypes.
引用
收藏
页码:96 / 102
页数:7
相关论文
共 40 条
[21]   Utility of Whole Exome Sequencing for Genetic Diagnosis of Previously Undiagnosed Pediatric Neurology Patients [J].
Kuperberg, Maya ;
Lev, Dorit ;
Blumkin, Lubov ;
Zerem, Ayelet ;
Ginsberg, Mira ;
Linder, Ilan ;
Carmi, Nirit ;
Kivity, Sarah ;
Lerman-Sagie, Tally ;
Leshinsky-Silver, Esther .
JOURNAL OF CHILD NEUROLOGY, 2016, 31 (14) :1534-1539
[22]   Actin mutations are one cause of congenital fibre type disproportion [J].
Laing, NG ;
Clarke, NF ;
Dye, DE ;
Liyanage, K ;
Walker, KR ;
Kobayashi, Y ;
Shimakawa, S ;
Hagiwara, T ;
Ouvrier, R ;
Sparrow, JC ;
Nishino, I ;
North, KN ;
Nonaka, I .
ANNALS OF NEUROLOGY, 2004, 56 (05) :689-694
[23]   RD-Connect, NeurOmics and EURenOmics: collaborative European initiative for rare diseases [J].
Lochmueller, Hanns ;
Badowska, Dorota M. ;
Thompson, Rachel ;
Knoers, Nine V. ;
Aartsma-Rus, Annemieke ;
Gut, Ivo ;
Wood, Libby ;
Harmuth, Tina ;
Durudas, Andre ;
Graessner, Holm ;
Schaefer, Franz ;
Riess, Olaf .
EUROPEAN JOURNAL OF HUMAN GENETICS, 2018, 26 (06) :778-785
[24]   Congenital myopathies - Clinical features and frequency of individual subtypes diagnosed over a 5-year period in the United Kingdom [J].
Maggi, L. ;
Scoto, M. ;
Cirak, S. ;
Robb, S. A. ;
Klein, A. ;
Lillis, S. ;
Cullup, T. ;
Feng, L. ;
Manzur, A. Y. ;
Sewry, C. A. ;
Abbs, S. ;
Jungbluth, H. ;
Muntoni, F. .
NEUROMUSCULAR DISORDERS, 2013, 23 (03) :195-205
[25]   Effectiveness of whole-exome sequencing and costs of the traditional diagnostic trajectory in children with intellectual disability [J].
Monroe, Glen R. ;
Frederix, Gerardus W. ;
Savelberg, Sanne M. C. ;
de Vries, Tamar I. ;
Duran, Karen J. ;
van der Smagt, Jasper J. ;
Terhal, Paulien A. ;
van Hasselt, Peter M. ;
Kroes, Hester Y. ;
Verhoeven-Duif, Nanda M. ;
Nijman, Isaac J. ;
Carbo, Ellen C. ;
van Gassen, Koen L. ;
Knoers, Nine V. ;
Hovels, Anke M. ;
van Haelst, Mieke M. ;
Visser, Gepke ;
van Haaften, Gijs .
GENETICS IN MEDICINE, 2016, 18 (09) :949-956
[26]   Mutations in KLHL40 Are a Frequent Cause of Severe Autosomal-Recessive Nemaline Myopathy [J].
Ravenscroft, Gianina ;
Miyatake, Satoko ;
Lehtokari, Vilma-Lotta ;
Todd, Emily J. ;
Vomauen, Pauliina ;
Yau, Kyle S. ;
Hayashi, Yukiko K. ;
Miyake, Noriko ;
Tsurusaki, Yoshinori ;
Doi, Hiroshi ;
Saitsu, Hirotomo ;
Osaka, Hitoshi ;
Yamashita, Sumimasa ;
Ohya, Takashi ;
Sakamoto, Yuko ;
Koshimizu, Eriko ;
Imamura, Shintaro ;
Yamashita, Michiaki ;
Ogata, Kazuhiro ;
Shiina, Masaaki ;
Bryson-Richardson, Robert J. ;
Vaz, Raquel ;
Ceyhan, Ozge ;
Brownstein, Catherine A. ;
Swanson, Lindsay C. ;
Monnot, Sophie ;
Romero, Norma B. ;
Amthor, Helge ;
Kresoje, Nina ;
Sivadorai, Padma ;
Kiraly-Borri, Cathy ;
Haliloglu, Goknur ;
Talim, Beril ;
Orhan, Diclehan ;
Kale, Gulsev ;
Charles, Adrian K. ;
Fabian, Victoria A. ;
Davis, Mark R. ;
Lammens, Martin ;
Sewry, Caroline A. ;
Manzur, Adnan ;
Muntoni, Francesco ;
Clarke, Nigel F. ;
North, Kathryn N. ;
Bertini, Enrico ;
Nevo, Yoram ;
Willichowski, Eldthard ;
Silberg, Inger E. ;
Topaloglu, Haluk ;
Beggs, Alan H. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2013, 93 (01) :6-18
[27]   The sensitivity of exome sequencing in identifying pathogenic mutations for LGMD in the United States [J].
Reddy, Hemakumar M. ;
Cho, Kyung-Ah ;
Lek, Monkol ;
Estrella, Elicia ;
Valkanas, Elise ;
Jones, Michael D. ;
Mitsuhashi, Satomi ;
Darras, Basil T. ;
Amato, Anthony A. ;
Lidov, Hart G. W. ;
Brownstein, Catherine A. ;
Margulies, David M. ;
Yu, Timothy W. ;
Salih, Mustafa A. ;
Kunkel, Louis M. ;
MacArthur, Daniel G. ;
Kang, Peter B. .
JOURNAL OF HUMAN GENETICS, 2017, 62 (02) :243-252
[28]   Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology [J].
Richards, Sue ;
Aziz, Nazneen ;
Bale, Sherri ;
Bick, David ;
Das, Soma ;
Gastier-Foster, Julie ;
Grody, Wayne W. ;
Hegde, Madhuri ;
Lyon, Elaine ;
Spector, Elaine ;
Voelkerding, Karl ;
Rehm, Heidi L. .
GENETICS IN MEDICINE, 2015, 17 (05) :405-424
[29]   The genetic basis of undiagnosed muscular dystrophies and myopathies: Results from 504 patients [J].
Savarese, Marco ;
Di Fruscio, Giuseppina ;
Torella, Annalaura ;
Fiorillo, Chiara ;
Magri, Francesca ;
Fanin, Marina ;
Ruggiero, Lucia ;
Ricci, Giulia ;
Astrea, Guja ;
Passamano, Luigia ;
Ruggieri, Alessandra ;
Ronchi, Dario ;
Tasca, Giorgio ;
D'Amico, Adele ;
Janssens, Sandra ;
Farina, Olimpia ;
Mutarelli, Margherita ;
Marwah, Veer Singh ;
Garofalo, Arcomaria ;
Giugliano, Teresa ;
Sanpaolo, Simone ;
Del Vecchio Blanco, Francesca ;
Esposito, Gaia ;
Piluso, Giulio ;
D'Ambrosio, Paola ;
Petillo, Roberta ;
Musumeci, Olimpia ;
Rodolico, Carmelo ;
Messina, Sonia ;
Evilae, Anni ;
Hackman, Peter ;
Filosto, Massimiliano ;
Di Iorio, Giuseppe ;
Siciliano, Gabriele ;
Mora, Marina ;
Maggi, Lorenzo ;
Minetti, Carlo ;
Sacconi, Sabrina ;
Santoro, Lucio ;
Claes, Kathleen ;
Vercelli, Liliana ;
Mongini, Tiziana ;
Ricci, Enzo ;
Gualandi, Francesca ;
Tupler, Rossella ;
De Bleecker, Jan ;
Udd, Bjarne ;
Toscano, Antonio ;
Moggio, Maurizio ;
Pegoraro, Elena .
NEUROLOGY, 2016, 87 (01) :71-76
[30]  
Schofield D., 2017, NPJ GENOM MED, V2, P2