Hemoglobin as a Nitrite Anhydrase: Modeling Methemoglobin-Mediated N2O3 Formation

被引:36
作者
Hopmann, Kathrin H. [1 ,2 ]
Cardey, Bruno [1 ,2 ]
Gladwin, Mark T. [3 ,4 ]
Kim-Shapiro, Daniel B. [5 ]
Ghosh, Abhik [1 ,2 ]
机构
[1] Univ Tromso, Ctr Theoret & Computat Chem, N-9037 Tromso, Norway
[2] Univ Tromso, Dept Chem, N-9037 Tromso, Norway
[3] Univ Pittsburgh, Vasc Med Inst, Pittsburgh, PA 15213 USA
[4] Div Pulm Allergy & Crit Care Med, Dept Med, Pittsburgh, PA 15213 USA
[5] Wake Forest Univ, Dept Phys, Winston Salem, NC 27109 USA
关键词
computational chemistry; heme proteins; iron; nitrite anhydrase; reaction mechanisms; REDUCTIVE NITROSYLATION; DINITROGEN TRIOXIDE; LINKAGE ISOMERISM; MET HEMOGLOBIN; OXIDE; HEME; NO; NITROSATION; GENERATION; REACTIVITY;
D O I
10.1002/chem.201003578
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Nitrite has recently been recognized as a storage form of NO in blood and as playing a key role in hypoxic vasodilation. The nitrite ion is readily reduced to NO by hemoglobin in red blood cells, which, as it happens, also presents a conundrum. Given NO's enormous affinity for ferrous heme, a key question concerns how it escapes capture by hemoglobin as it diffuses out of the red cells and to the endothelium, where vasodilation takes place. Dinitrogen trioxide (N2O3) has been proposed as a vehicle that transports NO to the endothelium, where it dissociates to NO and NO2. Although N2O3 formation might be readily explained by the reaction Hb-Fe3+ + NO2- + NODHb-Fe2+ + N2O3, the exact manner in which methemoglobin (Hb-Fe3+), nitrite and NO interact with one another is unclear. Both an "Hb-Fe3+-NO2-+NO" pathway and an "Hb-Fe3+-NO+NO2-" pathway have been proposed. Neither pathway has been established experimentally. Nor has there been any attempt until now to theoretically model N2O3 formation, the so-called nitrite anhydrase reaction. Both pathways have been examined here in a detailed density functional theory (DFT, B3LYP/TZP) study and both have been found to be feasible based on energetics criteria. Modeling the "Hb-Fe3+-NO2-+NO" pathway proved complex. Not only are multiple linkage-isomeric (N- and O-coordinated) structures conceivable for methemoglobin-nitrite, multiple isomeric forms are also possible for N2O3 (the lowest-energy state has an N-N-bonded nitronitrosyl structure, O2N-NO). We considered multiple spin states of methemoglobin-nitrite as well as ferromagnetic and antiferromagnetic coupling of the Fe3+ and NO spins. Together, the isomerism and spin variables result in a diabolically complex combinatorial space of reaction pathways. Fortunately, transition states could be successfully calculated for the vast majority of these reaction channels, both M-S = 0 and M-S = 1. For a six-coordinate Fe3+-O-nitrito starting geometry, which is plausible for methemoglobin-nitrite, we found that N2O3 formation entails barriers of about 17-20 kcal mol(-1), which is reasonable for a physiologically relevant reaction. For the "Hb-Fe3+-NO+NO2-" pathway, which was also found to be energetically reasonable, our calculations indicate a two-step mechanism. The first step involves transfer of an electron from NO2- to the Fe3+-heme-NO center ({FeNO}(6)), resulting in formation of nitrogen dioxide and an Fe2+-heme-NO center ({FeNO}(7)). Subsequent formation of N2O3 entails a barrier of only 8.1 kcal mol(-1). From an energetics point of view, the nitrite anhydrase reaction thus is a reasonable proposition. Although it is tempting to interpret our results as favoring the "{FeNO}(6) + NO2-" pathway over the "Fe3+-nitrite+NO" pathway, both pathways should be considered energetically reasonable for a biological reaction and it seems inadvisable to favor a unique reaction channel based solely on quantum chemical modeling.
引用
收藏
页码:6348 / 6358
页数:11
相关论文
共 45 条
[1]   Catalytic generation of N2O3 by the concerted nitrite reductase and anhydrase activity of hemoglobin [J].
Basu, Swati ;
Grubina, Rozalina ;
Huang, Jinming ;
Conradie, Jeanet ;
Huang, Zhi ;
Jeffers, Anne ;
Jiang, Alice ;
He, Xiaojun ;
Azarov, Ivan ;
Seibert, Ryan ;
Mehta, Atul ;
Patel, Rakesh ;
King, Stephen Bruce ;
Hogg, Neil ;
Ghosh, Abhik ;
Gladwin, Mark T. ;
Kim-Shapiro, Daniel B. .
NATURE CHEMICAL BIOLOGY, 2007, 3 (12) :785-794
[2]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[3]  
Butler A.R., 2003, Life, Death and Nitric Oxide, Royal Society of Chemistry
[4]   Formation of nitric oxide from nitrous acid in ischemic tissue and skin [J].
Butler, AR ;
Ridd, JH .
NITRIC OXIDE-BIOLOGY AND CHEMISTRY, 2004, 10 (01) :20-24
[5]   Crystal structures of the nitrite and nitric oxide complexes of horse heart myoglobin [J].
Copeland, Daniel M. ;
SoareS, Alexel S. ;
West, Ann H. ;
Richter-Addo, George B. .
JOURNAL OF INORGANIC BIOCHEMISTRY, 2006, 100 (08) :1413-1425
[6]   Nitrite reduction to nitric oxide by deoxyhemoglobin vasodilates the human circulation [J].
Cosby, K ;
Partovi, KS ;
Crawford, JH ;
Patel, RP ;
Reiter, CD ;
Martyr, S ;
Yang, BK ;
Waclawiw, MA ;
Zalos, G ;
Xu, XL ;
Huang, KT ;
Shields, H ;
Kim-Shapiro, DB ;
Schechter, AN ;
Cannon, RO ;
Gladwin, MT .
NATURE MEDICINE, 2003, 9 (12) :1498-1505
[7]   Hydroxide rather than histidine is coordinated to the heme in five-coordinate ferric Scapharca inaequivalvis hemoglobin [J].
Das, TK ;
Boffi, A ;
Chiancone, E ;
Rousseau, DL .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (05) :2916-2919
[8]   Mechanism of the six-electron reduction of nitrite to ammonia by cytochrome c nitrite reductase [J].
Einsle, O ;
Messerschmidt, A ;
Huber, R ;
Kroneck, PMH ;
Neese, F .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (39) :11737-11745
[9]   Tissue Processing of Nitrite in Hypoxia AN INTRICATE INTERPLAY OF NITRIC OXIDE-GENERATING AND-SCAVENGING SYSTEMS [J].
Feelisch, Martin ;
Fernandez, Bernadette O. ;
Bryan, Nathan S. ;
Garcia-Saura, Maria Francisca ;
Bauer, Selena ;
Whitlock, David R. ;
Ford, Peter C. ;
Janero, David R. ;
Rodriguez, Juan ;
Ashrafian, Houman .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2008, 283 (49) :33927-33934
[10]   Nitrite catalyzes ferriheme protein reductive nitrosylation [J].
Fernandez, BO ;
Ford, PC .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (35) :10510-10511