Magneto-Controlled Biocatalytic Cascades with Logically Processed Input Signals - Substrate Channeling versus Free Diffusion

被引:19
作者
Filipov, Yaroslav [1 ]
Zakharchenko, Andrey [2 ]
Minko, Sergiy [2 ]
Katz, Evgeny [1 ]
机构
[1] Clarkson Univ, Dept Chem & Biomol Sci, Potsdam, NY 13699 USA
[2] Univ Georgia, Nanostruct Mat Lab, Athens, GA 30602 USA
基金
美国国家科学基金会;
关键词
biocatalytic cascades; enzymes; logic gates; magnetic nanoparticles; switchable systems; PQQ-GLUCOSE DEHYDROGENASE; ENZYME-BASED LOGIC; AMPEROMETRIC TRANSDUCTION; IMPROVED SEPARATION; OUTPUT SIGNALS; FILTER; NANOPARTICLES; SYSTEMS; GATES; DIRECTION;
D O I
10.1002/cphc.201800851
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Magnetic nanoparticles (MNPs) functionalized with various enzymes (amyloglucosidase, glucose oxidase and horseradish peroxidase) were used to perform biocatalytic cascades in two different states, solute suspension or aggregated, produced in the absence or presence of an external magnetic field. The biocatalytic reactions proceeded through bulk solution diffusion of intermediate substrates or substrate channeling, when the systems were dispersed or aggregated, respectively. The both pathways have shown very similar kinetics, unless the intermediate substrate was consumed by an additional biocatalytic process called "filter" for brevity. In the presence of the "filter" process, the diffusional process in the bulk solution was significantly inhibited, while the process based on the substrate channeling was still active. The systems were switched reversibly between the inhibited dispersed state and the active aggregated state by removing and applying the external magnetic field, respectively. The signal-controlled biocatalytic cascades were considered as Boolean logic circuits with the inputs consisting of biomolecules and the magnetic field on-off.
引用
收藏
页码:3035 / 3043
页数:9
相关论文
共 65 条
[1]   Thermo-switchable Activity of the Restriction Endonuclease SsoII Achieved by Site-Directed Enzyme Modification [J].
Abrosimova, Liudmila A. ;
Monakhova, Mayya V. ;
Migur, Anzhela Yu. ;
Wolfgang, Wende ;
Pingoud, Alfred ;
Kubareva, Elena A. ;
Oretskaya, Tatiana S. .
IUBMB LIFE, 2013, 65 (12) :1012-1016
[2]  
Adamatzky A., 2007, UNCONVENTIONAL COMPU
[3]   LIGHT-INDUCED ENZYME ACTIVITY CHANGES ASSOCIATED WITH PHOTOISOMERIZATION OF BOUND SPIROPYRAN [J].
AIZAWA, M ;
NAMBA, K ;
SUZUKI, S .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1977, 182 (01) :305-310
[4]  
[Anonymous], 2010, CELL SIGNALLING
[5]  
[Anonymous], 2012, Infochemistry-information processing at the nanoscale
[6]  
[Anonymous], 2003, Molecular Computing
[7]   Modularity of Biochemical Filtering for Inducing Sigmoid Response in Both Inputs in an Enzymatic AND Gate [J].
Bakshi, Saira ;
Zavalov, Oleksandr ;
Halamek, Jan ;
Privman, Vladimir ;
Katz, Evgeny .
JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (34) :9857-9865
[8]   Nanoreactors based on DNAzyme-functionalized magnetic nanoparticles activated by magnetic field [J].
Bakshi, Saira F. ;
Guz, Nataliia ;
Zakharchenko, Andrey ;
Deng, Han ;
Tumanov, Alexei V. ;
Woodworth, Craig D. ;
Minko, Sergiy ;
Kolpashchikov, Dmitry M. ;
Katz, Evgeny .
NANOSCALE, 2018, 10 (03) :1356-1365
[9]   Magnetic Field-Activated Sensing of mRNA in Living Cells [J].
Bakshi, Saira F. ;
Guz, Nataliia ;
Zakharchenko, Audrey ;
Deng, Han ;
Tumanov, Alexei V. ;
Woodworth, Craig D. ;
Minko, Sergiy ;
Kolpashchikov, Dmitry M. ;
Katz, Evgeny .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2017, 139 (35) :12117-12120
[10]   Application of a nitrospiropyran-FAD-reconstituted glucose oxidase and charged electron mediators as optobioelectronic assemblies for the amperometric transduction of recorded optical signals: Control of the ''on''-''off'' direction of the photoswitch [J].
Blonder, R ;
Katz, E ;
Willner, I ;
Wray, V ;
Buckmann, AF .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (49) :11747-11757