An enhanced sampling QM/AMOEBA approach: The case of the excited state intramolecular proton transfer in solvated 3-hydroxyflavone

被引:14
作者
Nottoli, Michele [1 ]
Bondanza, Mattia [1 ]
Lipparini, Filippo [1 ]
Mennucci, Benedetta [1 ]
机构
[1] Univ Pisa, Dipartimento Chim & Chim Ind, Via G Moruzzi 13, I-56124 Pisa, Italy
基金
欧洲研究理事会;
关键词
MOLECULAR-DYNAMICS; QM/MM METHODS; COMPLEX-SYSTEMS; SOLVENT; SPECTROSCOPY; FLUORESCENCE; SIMULATIONS; QUANTUM; ESIPT; ENERGIES;
D O I
10.1063/5.0046844
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present an extension of the polarizable quantum mechanical (QM)/AMOEBA approach to enhanced sampling techniques. This is achieved by connecting the enhanced sampling PLUMED library to the machinery based on the interface of Gaussian and Tinker to perform QM/AMOEBA molecular dynamics. As an application, we study the excited state intramolecular proton transfer of 3-hydroxyflavone in two solvents: methanol and methylcyclohexane. By using a combination of molecular dynamics and umbrella sampling, we find an ultrafast component of the transfer, which is common to the two solvents, and a much slower component, which is active in the protic solvent only. The mechanisms of the two components are explained in terms of intramolecular vibrational redistribution and intermolecular hydrogen-bonding, respectively. Ground and excited state free energies along an effective reaction coordinate are finally obtained allowing for a detailed analysis of the solvent mediated mechanism.
引用
收藏
页数:10
相关论文
共 77 条
[21]   TINKTEP: A fully self-consistent, mutually polarizable QM/MM approach based on the AMOEBA force field [J].
Dziedzic, Jacek ;
Mao, Yuezhi ;
Shao, Yihan ;
Ponder, Jay ;
Head-Gordon, Teresa ;
Head-Gordon, Martin ;
Skylaris, Chris-Kriton .
JOURNAL OF CHEMICAL PHYSICS, 2016, 145 (12)
[22]  
Frisch M. J., 2016, GAUSSIAN 16 REV B01
[23]   Hybrid quantum and molecular mechanical simulations: An alternative avenue to solvent effects in organic chemistry [J].
Gao, JL .
ACCOUNTS OF CHEMICAL RESEARCH, 1996, 29 (06) :298-305
[24]  
Gao JL, 1997, J COMPUT CHEM, V18, P1061, DOI 10.1002/(SICI)1096-987X(199706)18:8<1061::AID-JCC10>3.0.CO
[25]  
2-G
[26]   Nonequilibrium Dynamics of Proton-Coupled Electron Transfer in Proton Wires: Concerted but Asynchronous Mechanisms [J].
Goings, Joshua J. ;
Hammes-Schiffer, Sharon .
ACS CENTRAL SCIENCE, 2020, 6 (09) :1594-1601
[27]  
Gowers R. J., 2016, P 15 PYTHON SCI C, P98, DOI DOI 10.25080/MAJORA-629E541A-00E
[28]   A FAST ALGORITHM FOR PARTICLE SIMULATIONS [J].
GREENGARD, L ;
ROKHLIN, V .
JOURNAL OF COMPUTATIONAL PHYSICS, 1987, 73 (02) :325-348
[29]   DECOMPOSITION OF HARDY FUNCTIONS INTO SQUARE INTEGRABLE WAVELETS OF CONSTANT SHAPE [J].
GROSSMANN, A ;
MORLET, J .
SIAM JOURNAL ON MATHEMATICAL ANALYSIS, 1984, 15 (04) :723-736
[30]   Polarizable force fields [J].
Halgren, TA ;
Damm, W .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2001, 11 (02) :236-242