Methods for in vitro CRISPR/CasRx-Mediated RNA Editing

被引:13
|
作者
Chuang, Yu-Fan [1 ,2 ]
Wang, Peng-Yuan [1 ]
Kumar, Satheesh [2 ]
Lama, Suraj [2 ]
Lin, Fan-Li [1 ,2 ]
Liu, Guei-Sheung [2 ,3 ,4 ]
机构
[1] Chinese Acad Sci, Shenzhen Inst Adv Technol, Shenzhen Key Lab Biomimet Mat & Cellular Immunomo, Shenzhen, Peoples R China
[2] Univ Tasmania, Menzies Inst Med Res, Hobart, Tas, Australia
[3] Univ Melbourne, Dept Surg, Ophthalmol, East Melbourne, Vic, Australia
[4] Aier Eye Inst, Changsha, Peoples R China
来源
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY | 2021年 / 9卷
基金
英国医学研究理事会;
关键词
CRISPR; Cas13d; CasRx; RNA editing; VEGF (Vascular endothelial growth factor); AAV (Adeno-associated virus);
D O I
10.3389/fcell.2021.667879
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Specific changes in the genome have been accomplished by the revolutionary gene-editing tool known as clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated (Cas) system. The advent of programmable RNA editing CRISPR/Cas nucleases has made this gene-editing tool safer and more precise. Specifically, CasRx, a family member of the Cas13d family, has shown great therapeutic potential. Here, we describe the in vitro methods of utilizing this powerful RNA editing platform and determine the RNA editing efficiencies for CasRx with different forms of guide RNAs (also known as gRNA or sgRNA).
引用
收藏
页数:13
相关论文
共 50 条
  • [1] Engineered Extracellular Vesicle-Delivered CRISPR/CasRx as a Novel RNA Editing Tool
    Li, Tianwen
    Zhang, Liansheng
    Lu, Tao
    Zhu, Tongming
    Feng, Canbin
    Gao, Ni
    Liu, Fei
    Yu, Jingyu
    Chen, Kezhu
    Zhong, Junjie
    Tang, Qisheng
    Zhang, Quan
    Deng, Xiangyang
    Ren, Junwei
    Zeng, Jun
    Zhou, Haibo
    Zhu, Jianhong
    ADVANCED SCIENCE, 2023, 10 (10)
  • [2] CRISPR-Cas13-mediated RNA editing in the silkworm Bombyx mori
    Tang, Yao-Hao
    Zhang, Xing
    Dai, Zong-Cai
    Li, Hao
    Yang, Yan
    Zhao, Tu-Jing
    Yuan, Dong-Qin
    Qian, Wen-Liang
    Cheng, Dao-Jun
    ZOOLOGICAL RESEARCH, 2024, 45 (06) : 1249 - 1260
  • [3] CRISPR/CasRx Proof-of-Concept for RNA Degradation: A Future Tool against RNA Viruses?
    Perez-SanJose, Diana
    de la Fuente, Miguel Angel
    Serna Perez, Julia
    Simarro, Maria
    Eiros Bouza, Jose Maria
    Sanz-Munoz, Ivan
    PHARMACEUTICALS, 2022, 15 (01)
  • [4] CRISPR-based detection and editing of RNA
    Wiedenheft, Blake
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2024, 300 (03) : S11 - S11
  • [5] Commentary: RNA editing with CRISPR-Cas13
    Matsoukas, Ianis G.
    FRONTIERS IN GENETICS, 2018, 9
  • [6] CRISPR/Cas9-mediated noncoding RNA editing in human cancers
    Yang, Jie
    Meng, Xiaodan
    Pan, Jinchang
    Jiang, Nan
    Zhou, Chengwei
    Wu, Zhenhua
    Gong, Zhaohui
    RNA BIOLOGY, 2018, 15 (01) : 35 - 43
  • [7] CRISPR Based Programmable RNA Editing in Primary Hippocampal Neurons
    Ravichandran, Karthick
    Khargonkar, Tulika
    Samaddar, Sarbani
    Banerjee, Sourav
    CURRENT PROTOCOLS, 2023, 3 (09):
  • [8] Applications of CRISPR/Cas13-Based RNA Editing in Plants
    Kavuri, Naga Rajitha
    Ramasamy, Manikandan
    Qi, Yiping
    Mandadi, Kranthi
    CELLS, 2022, 11 (17)
  • [9] CRISPR-Csy4-Mediated Editing of Rotavirus Double-Stranded RNA Genome
    Papa, Guido
    Venditti, Luca
    Braga, Luca
    Schneider, Edoardo
    Giacca, Mauro
    Petris, Gianluca
    Burrone, Oscar R.
    CELL REPORTS, 2020, 32 (13):
  • [10] CRISPR/Cas13 sgRNA-Mediated RNA-RNA Interaction Mapping in Live Cells with APOBEC RNA Editing
    Diao, Li-Ting
    Xie, Shu-Juan
    Xu, Wan-Yi
    Zhang, Hai-Hui
    Hou, Ya-Rui
    Hu, Yan-Xia
    Liang, Xin-Xiang
    Liang, Jun-Bin
    Zhang, Qi
    Xiao, Zhen-Dong
    ADVANCED SCIENCE, 2024, 11 (45)