Measurement of Heme Ruffling Changes in MhuD Using UV-vis Spectroscopy

被引:40
作者
Graves, Amanda B. [1 ]
Graves, Max T. [1 ]
Liptak, Matthew D. [1 ]
机构
[1] Univ Vermont, Dept Chem, Burlington, VT 05405 USA
关键词
IRON(III) HYDROPEROXIDE INTERMEDIATE; MAGNETIC CIRCULAR-DICHROISM; PSEUDOMONAS-AERUGINOSA HEME; STAPHYLOCOCCUS-AUREUS ISDG; DEGRADING ENZYME ISDI; MYCOBACTERIUM-TUBERCULOSIS; ELECTRONIC-STRUCTURE; GROUND-STATE; ACTIVE-SITE; BASIS-SETS;
D O I
10.1021/acs.jpcb.6b01497
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
For decades it has been known that an out-of-plane ruffling distortion of heme perturbs its UV-vis absorption (Abs) spectrum, but whether increased ruffling induces a red or blue shift of the Soret band has remained a topic of debate. This debate has been resolved by the spectroscopic and computational characterization of Mycobacterium tuberculosis MhuD presented here, an enzyme that converts heme, oxygen, and reducing equivalents to nonheme iron and mycobilin. W66F and W66A MhuD have been characterized using H-1 nuclear magnetic resonance, Abs, and magnetic circular dichroism spectroscopies, and the data have been used to develop an experimentally validated theoretical model of ruffled, ferric heme. The PBE density functional theory (DFT) model that has been developed accurately reproduces the observed spectral changes from wild type enzyme, and the underlying quantum mechanical origins of these ruffling-induced changes were revealed by analyzing the PBE DFT description of the electronic structure. Small amounts of heme ruffling have no influence on the energy of the Q-band and blue-shift the Soret band due to symmetry-allowed mixing of the Fe 3d(xy) and porphyrin a(2u) orbitals. Larger amounts of ruffling red-shift both the Q and Soret bands due to disruption of pi-bonding within the porphyrin ring.
引用
收藏
页码:3844 / 3853
页数:10
相关论文
共 45 条
[1]   RUFFLING OF NICKEL(II) OCTAETHYLPORPHYRIN IN SOLUTION [J].
ALDEN, RG ;
CRAWFORD, BA ;
DOOLEN, R ;
ONDRIAS, MR ;
SHELNUTT, JA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1989, 111 (06) :2070-2072
[2]  
[Anonymous], J CHEM PHYS
[3]   Visualization of solvation structures in liquid mixtures [J].
Bergman, DL ;
Laaksonen, L ;
Laaksonen, A .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1997, 15 (05) :301-+
[4]   SIMULTANEOUS DETERMINATION OF HEMES-A, HEMES-B, AND HEMES-C FROM PYRIDINE HEMOCHROME SPECTRA [J].
BERRY, EA ;
TRUMPOWER, BL .
ANALYTICAL BIOCHEMISTRY, 1987, 161 (01) :1-15
[5]   Oxidation of heme to β- and δ-biliverdin by Pseudomonas aeruginosa heme oxygenase as a consequence of an unusual seating of the heme [J].
Caignan, GA ;
Deshmukh, R ;
Wilks, A ;
Zeng, YH ;
Huang, HW ;
Moënne-Loccoz, P ;
Bunce, RA ;
Eastman, MA ;
Rivera, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (50) :14879-14892
[6]   The hydroxide complex of pseudomonas aeruginosa heme oxygenase as a model of the low-spin iron(III) hydroperoxide intermediate in heme catabolism:: 13C NMR spectroscopic studies suggest the active participation of the heme in macrocycle hydroxylation [J].
Caignan, GA ;
Deshmukh, R ;
Zeng, YH ;
Wilks, A ;
Bunce, RA ;
Rivera, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (39) :11842-11852
[7]   Low-temperature MCD studies of low-spin ferric complexes of tetramesitylporphyrinate: Evidence for the novel (d(xz),d(yz))(4)(d(xy))(1) ground state which models the spectroscopic properties of heme d [J].
Cheesman, MR ;
Walker, FA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (31) :7373-7380
[8]   Quantum mechanical/molecular mechanical study of mechanisms of heme degradation by the enzyme heme oxygenase: The strategic function of the water cluster [J].
Chen, Hui ;
Moreau, Yohann ;
Derat, Etienne ;
Shaik, Sason .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (06) :1953-1965
[9]   Unusual Diheme Conformation of the Heme-Degrading Protein from Mycobacterium tuberculosis [J].
Chim, Nicholas ;
Iniguez, Angelina ;
Nguyen, Tran Que ;
Goulding, Celia W. .
JOURNAL OF MOLECULAR BIOLOGY, 2010, 395 (03) :595-608
[10]   Auxiliary basis sets for main row atoms and transition metals and their use to approximate Coulomb potentials [J].
Eichkorn, K ;
Weigend, F ;
Treutler, O ;
Ahlrichs, R .
THEORETICAL CHEMISTRY ACCOUNTS, 1997, 97 (1-4) :119-124