Comprehensive analysis ofSWEETfamily genes inEucalyptus(Eucalyptus grandis)

被引:7
|
作者
Yin, Qi [1 ]
Zhu, Li [1 ]
Du, Pingzhou [1 ]
Fan, Chunjie [2 ]
Wang, Jinyan [3 ]
Zhang, Baolong [3 ]
Li, Huiling [1 ]
机构
[1] South China Agr Univ, State Key Lab Conservat & Utilizat Subtrop Agrobi, Guangdong Key Lab Innovat Dev & Utilizat Forest P, Coll Forestry & Landscape Architecture, Guangzhou 510642, Guangdong, Peoples R China
[2] Chinese Acad Forestry, Res Inst Trop Forestry, Guangzhou, Guangdong, Peoples R China
[3] Jiangsu Acad Agr Sci, Prov Key Lab Agrobiol, Nanjing, Jiangsu, Peoples R China
基金
中国国家自然科学基金;
关键词
SWEET family genes; bioinformatics; Eucalyptus; expression pattern; GENOME-WIDE IDENTIFICATION; SUGAR TRANSPORTERS; EXPRESSION ANALYSIS; FAMILY; SUCROSE; PHLOEM; EVOLUTION; TOLERANCE; HOMOLOGS; SWEET17;
D O I
10.1080/13102818.2020.1790417
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
SWEET family genes play an important role in different physiological processes, including sugar transport and adjustments, plant development and environmental adaptability. BLAST tools and Hidden Markov Model-directed sequence alignments inEucalyptus grandisgenome identified 52EucalyptusSWEET genes containing MtN3/saliva domain. Out of these, 40 genes encode predicted proteins that have 6 or more transmembrane regions with two MtN3/saliva domains. Six predicted proteins contained only one MtN3/saliva domain, similar to the structure of microbial SemiSWEETs. Of the 52 SWEET candidates, only 45 SWEET family genes were mapped on 8 chromosomes, and most of them showed clustered distribution. The expression profiles revealed that the SWEET genes have different expression in different tissues, showing that they might play different functions inEucalyptus. Our results explored the evolutionary aspects, provided a systematic description ofEucalyptusSWEET genes and can help researchers to understand the functions of the SWEET family genes inEucalyptus.
引用
收藏
页码:595 / 604
页数:10
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