Three-dimensional reconstruction of helical polymers

被引:23
作者
Egelman, Edward H. [1 ]
机构
[1] Univ Virginia, Dept Biochem & Mol Genet, Charlottesville, VA 22908 USA
关键词
Helical polymers; Direct electron detectors; Variable twist; TOBACCO-MOSAIC-VIRUS; RAY FIBER DIFFRACTION; SINGLE-PARTICLE RECONSTRUCTION; NUCLEAR MAGNETIC-RESONANCE; CRYO-ELECTRON-MICROSCOPY; NEAR-ATOMIC-RESOLUTION; FD-COAT PROTEIN; FILAMENTOUS-BACTERIOPHAGE; CRYOELECTRON MICROSCOPY; ANGSTROM RESOLUTION;
D O I
10.1016/j.abb.2015.04.004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The field of three-dimensional electron microscopy began more than 45 years ago with a reconstruction of a helical phage tail, and helical polymers continue to be important objects for three-dimensional reconstruction due to the centrality of helical protein and nucleoprotein polymers in all aspects of biology. We are now witnessing a fundamental revolution in this area, made possible by direct electron detectors, which has led to near-atomic resolution for a number of important helical structures. Most importantly, the possibility of achieving such resolution routinely for a vast number of helical samples is within our reach. One of the main problems in helical reconstruction, ambiguities in assigning the helical symmetry, is overcome when one reaches a resolution where secondary structure is clearly visible. However, obstacles still exist due to the intrinsic variability within many helical filaments. (C) 2015 Elsevier Inc. All rights reserved.
引用
收藏
页码:54 / 58
页数:5
相关论文
共 85 条
[1]   High-Resolution Microtubule Structures Reveal the Structural Transitions in αβ-Tubulin upon GTP Hydrolysis [J].
Alushin, Gregory M. ;
Lander, Gabriel C. ;
Kellogg, Elizabeth H. ;
Zhang, Rui ;
Baker, David ;
Nogales, Eva .
CELL, 2014, 157 (05) :1117-1129
[2]   Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles [J].
Bai, Xiao-chen ;
Fernandez, Israel S. ;
McMullan, Greg ;
Scheres, Sjors H. W. .
ELIFE, 2013, 2
[3]   The respiratory syncytial virus nucleoprotein-RNA complex forms a left-handed helical nucleocapsid [J].
Bakker, Saskia E. ;
Duquerroy, Stephane ;
Galloux, Marie ;
Loney, Colin ;
Conner, Edward ;
Eleouet, Jean-Francois ;
Rey, Felix A. ;
Bhella, David .
JOURNAL OF GENERAL VIROLOGY, 2013, 94 :1734-1738
[4]   Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency [J].
Bammes, Benjamin E. ;
Rochat, Ryan H. ;
Jakana, Joanita ;
Chen, Dong-Hua ;
Chiu, Wah .
JOURNAL OF STRUCTURAL BIOLOGY, 2012, 177 (03) :589-601
[5]  
BARRETT AN, 1971, COLD SPRING HARB SYM, V36, P433
[6]   Structure of β-galactosidase at 3.2-Å resolution obtained by cryo-electron microscopy [J].
Bartesaghi, Alberto ;
Matthies, Doreen ;
Banerjee, Soojay ;
Merk, Alan ;
Subramaniam, Sriram .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (32) :11709-11714
[7]   Real-space processing of helical filaments in SPARX [J].
Behrmann, Elmar ;
Tao, Guozhi ;
Stokes, David L. ;
Egelman, Edward H. ;
Raunser, Stefan ;
Penczek, Pawel A. .
JOURNAL OF STRUCTURAL BIOLOGY, 2012, 177 (02) :302-313
[8]   MDA5 assembles into a polar helical filament on dsRNA [J].
Berke, Ian C. ;
Yu, Xiong ;
Modis, Yorgo ;
Egelman, Edward H. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (45) :18437-18441
[9]   X-ray and crystallographic studies of plant virus preparations. III [J].
Bernal, JD ;
Fankuchen, I .
JOURNAL OF GENERAL PHYSIOLOGY, 1941, 25 (01) :147-165
[10]   Distortion correction of tubular crystals: improvements in the acetylcholine receptor structure [J].
Beroukhim, R ;
Unwin, N .
ULTRAMICROSCOPY, 1997, 70 (1-2) :57-81