Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates

被引:1929
作者
Alberti, Simon [1 ,2 ]
Gladfelter, Amy [3 ,4 ]
Mittag, Tanja [5 ]
机构
[1] Max Planck Inst Mol Cell Biol & Genet, D-01307 Dresden, Germany
[2] Tech Univ Dresden, Ctr Mol & Cellular Bioengn, Biotechnol Ctr, D-01307 Dresden, Germany
[3] Univ North Carolina Chapel Hill, Chapel Hill, NC 27599 USA
[4] Marine Biol Lab, Woods Hole, MA 02543 USA
[5] St Jude Childrens Res Hosp, Dept Struct Biol, 332 N Lauderdale St, Memphis, TN 38105 USA
基金
欧洲研究理事会;
关键词
INTRINSICALLY DISORDERED PROTEINS; NUCLEAR IMPORT RECEPTOR; SEQUENCE DETERMINANTS; COMPLEX COACERVATION; RNA; FUS; DROPLETS; GRANULES; BINDING; PHOSPHORYLATION;
D O I
10.1016/j.cell.2018.12.035
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Evidence is now mounting that liquid-liquid phase separation (LLPS) underlies the formation of membraneless compartments in cells. This realization has motivated major efforts to delineate the function of such biomolecular condensates in normal cells and their roles in contexts ranging from development to age-related disease. There is great interest in understanding the underlying biophysical principles and the specific properties of biological condensates with the goal of bringing insights into a wide range of biological processes and systems. The explosion of physiological and pathological contexts involving LLPS requires clear standards for their study. Here, we propose guidelines for rigorous experimental characterization of LLPS processes in vitro and in cells, discuss the caveats of common experimental approaches, and point out experimental and theoretical gaps in the field.
引用
收藏
页码:419 / 434
页数:16
相关论文
共 117 条
[1]   A User's Guide for Phase Separation Assays with Purified Proteins [J].
Alberti, Simon ;
Saha, Shambaditya ;
Woodruff, Jeffrey B. ;
Franzmann, Titus M. ;
Wang, Jie ;
Hyman, Anthony A. .
JOURNAL OF MOLECULAR BIOLOGY, 2018, 430 (23) :4806-4820
[2]   The wisdom of crowds: regulating cell function through condensed states of living matter [J].
Alberti, Simon .
JOURNAL OF CELL SCIENCE, 2017, 130 (17) :2789-2796
[3]   Are aberrant phase transitions a driver of cellular aging? [J].
Alberti, Simon ;
Hyman, Anthony A. .
BIOESSAYS, 2016, 38 (10) :959-968
[4]   A Systematic Survey Identifies Prions and Illuminates Sequence Features of Prionogenic Proteins [J].
Alberti, Simon ;
Halfmann, Randal ;
King, Oliver ;
Kapila, Atul ;
Lindquist, Susan .
CELL, 2009, 137 (01) :146-158
[5]  
Amiram M, 2011, NAT MATER, V10, P141, DOI [10.1038/nmat2942, 10.1038/NMAT2942]
[6]  
Aumiller WM, 2016, NAT CHEM, V8, P129, DOI [10.1038/NCHEM.2414, 10.1038/nchem.2414]
[7]   Biomolecular condensates: organizers of cellular biochemistry [J].
Banani, Salman F. ;
Lee, Hyun O. ;
Hyman, Anthony A. ;
Rosen, Michael K. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2017, 18 (05) :285-298
[8]   Compositional Control of Phase-Separated Cellular Bodies [J].
Banani, Salman F. ;
Rice, Allyson M. ;
Peeples, William B. ;
Lin, Yuan ;
Jain, Saumya ;
Parker, Roy ;
Rosen, Michael K. .
CELL, 2016, 166 (03) :651-663
[9]   Requirements for Stress Granule Recruitment of Fused in Sarcoma (FUS) and TAR DNA-binding Protein of 43 kDa (TDP-43) [J].
Bentmann, Eva ;
Neumann, Manuela ;
Tahirovic, Sabina ;
Rodde, Ramona ;
Dormann, Dorothee ;
Haass, Christian .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2012, 287 (27) :23079-23094
[10]  
Bergeron-Sandoval L.P., 2018, BIORXIV, P145664, DOI DOI 10.1101/145664