How the stability of a folded protein depends on interfacial water properties and residue-residue interactions

被引:20
作者
Bianco, Valentino [1 ]
Pages-Gelabert, Neus [2 ]
Coluzza, Ivan [1 ]
Franzese, Giancarlo [2 ,3 ]
机构
[1] Univ Wien, Sensengasse 8-10, A-1090 Vienna, Austria
[2] Univ Barcelona, Fac Fis, Seccio Fis Estadist & Interdisciplinaria, Dept Fis Mat Condensada, Marti & Franques 1, E-08028 Barcelona, Spain
[3] Univ Barcelona, Inst Nanosci & Nanotechnol IN2UB, Av Joan 23 S-N, E-08028 Barcelona, Spain
基金
奥地利科学基金会;
关键词
Protein folding; Cold denaturation; Pressure denaturation; Interfacial water; Explicit water; Biological physics; FREE-ENERGY-LANDSCAPE; DE-NOVO DESIGN; COLD DENATURATION; HYDROPHOBIC INTERACTIONS; PRESSURE DENATURATION; COMPUTATIONAL DESIGN; HIGH-DENSITY; TEMPERATURE; HYDRATION; MODEL;
D O I
10.1016/j.molliq.2017.08.026
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Proteins tend to adopt a single or a reduced ensemble of configurations at natural conditions [1], but changes in temperature T and pressure P induce their unfolding. Therefore for each protein there is a stability region (SR) in the T-P thermodynamic plane outside which the biomolecule is denaturated. It is known that the extension and shape of the SR depend on i) the specific protein residue-residue interactions in the native state of the amino acids sequence and ii) the water properties at the hydration interface. Here we analyze by Monte Carlo simulations the different coarse-grained protein models in explicit water how changes in i) and ii) affect the SR. We show that the solvent properties ii) are essential to rationalize the SR shape at low T and high P and that our findings are robust with respect to parameter changes and with respect to different protein models, representative of the ordered and disordered proteins. These results can help in developing new strategies for the design of novel synthetic biopolymers. (c) 2017 Elsevier B.V. All rights reserved.
引用
收藏
页码:129 / 139
页数:11
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