Deep denoising for multi-dimensional synchrotron X-ray tomography without high-quality reference data

被引:33
作者
Hendriksen, Allard A. [1 ]
Buhrer, Minna [2 ]
Leone, Laura [3 ]
Merlini, Marco [3 ]
Vigano, Nicola [4 ]
Pelt, Daniel M. [1 ,5 ]
Marone, Federica [2 ]
di Michiel, Marco [4 ]
Batenburg, K. Joost [1 ,5 ]
机构
[1] Ctr Wiskunde & Informat, Amsterdam, Netherlands
[2] Paul Scherrer Inst, Swiss Light Source, Villigen, Switzerland
[3] Univ Milan, Dipartimento Sci Terra, Milan, Italy
[4] ESRF European Synchrotron, Grenoble, France
[5] Leiden Univ, Leiden Inst Adv Comp Sci, Leiden, Netherlands
基金
瑞士国家科学基金会; 荷兰研究理事会;
关键词
CONVOLUTIONAL NEURAL-NETWORK; IMAGE; RECONSTRUCTION; RADIATION;
D O I
10.1038/s41598-021-91084-8
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Synchrotron X-ray tomography enables the examination of the internal structure of materials at submicron spatial resolution and subsecond temporal resolution. Unavoidable experimental constraints can impose dose and time limits on the measurements, introducing noise in the reconstructed images. Convolutional neural networks (CNNs) have emerged as a powerful tool to remove noise from reconstructed images. However, their training typically requires collecting a dataset of paired noisy and high-quality measurements, which is a major obstacle to their use in practice. To circumvent this problem, methods for CNN-based denoising have recently been proposed that require no separate training data beyond the already available noisy reconstructions. Among these, the Noise2Inverse method is specifically designed for tomography and related inverse problems. To date, applications of Noise2Inverse have only taken into account 2D spatial information. In this paper, we expand the application of Noise2Inverse in space, time, and spectrum-like domains. This development enhances applications to static and dynamic micro-tomography as well as X-ray diffraction tomography. Results on real-world datasets establish that Noise2Inverse is capable of accurate denoising and enables a substantial reduction in acquisition time while maintaining image quality.
引用
收藏
页数:13
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