RNA editing machinery in plant organelles

被引:76
作者
Yan, Junjie
Zhang, Qunxia
Yin, Ping [1 ]
机构
[1] Huazhong Agr Univ, Natl Key Lab Crop Genet Improvement, Wuhan 430070, Hubei, Peoples R China
基金
中国博士后科学基金; 中国国家自然科学基金;
关键词
RNA editing; editosome; plant organelles; PENTATRICOPEPTIDE REPEAT PROTEIN; MOTIF-CONTAINING PROTEIN; SINGLE-STRANDED RNA; ARABIDOPSIS-THALIANA; STRUCTURAL BASIS; MESSENGER-RNA; MORF PROTEINS; DYW PROTEIN; PPR-PROTEIN; RECOGNITION;
D O I
10.1007/s11427-017-9170-3
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
RNA editing is a type of post-transcriptional modification that includes nucleotide insertion/deletion or conversion. Different categories of RNA editing have been widely observed in distinct RNAs from divergent organisms. In flowering plants, RNA editing usually alters cytidine to uridine in plastids and mitochondria, playing important roles in various plant developmental processes, including organelle biogenesis, adaptation to environmental changes, and signal transduction. Numerous studies have demonstrated that a number of factors are involved in plant RNA editing, such as pentatricopeptide repeat (PPR) proteins, multiple organelle RNA editing factors (MORF, also known as RIP), organelle RNA recognition motif (ORRM) containing proteins, protoporphyrinogen IX oxidase 1 (PPO1) and organelle zinc finger 1 (OZ1). These factors play diverse roles in plant RNA editing due to their distinct characteristics. In this review, we discuss the functional roles of the individual editing factors and their associations in plant RNA editing.
引用
收藏
页码:162 / 169
页数:8
相关论文
共 57 条
[1]   Pentatricopeptide Repeat Proteins in Plants [J].
Barkan, Alice ;
Small, Ian .
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 65, 2014, 65 :415-+
[2]   The conserved domain in MORF proteins has distinct affinities to the PPR and E elements in PPR RNA editing factors [J].
Bayer-Csaszar, Eszter ;
Haag, Sascha ;
Joerg, Anja ;
Glass, Franziska ;
Haertel, Barbara ;
Obata, Toshihiro ;
Meyer, Etienne H. ;
Brennicke, Axel ;
Takenaka, Mizuki .
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2017, 1860 (08) :813-828
[3]   Comprehensive High-Resolution Analysis of the Role of an Arabidopsis Gene Family in RNA Editing [J].
Bentolila, Stephane ;
Oh, Julyun ;
Hanson, Maureen R. ;
Bukowski, Robert .
PLOS GENETICS, 2013, 9 (06)
[4]   RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing [J].
Bentolila, Stephane ;
Heller, Wade P. ;
Sun, Tao ;
Babina, Arianne M. ;
Friso, Giulia ;
van Wijk, Klaas J. ;
Hanson, Maureen R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (22) :E1453-E1461
[5]   The cytidine deaminase signature HxE(x)nCxxC of DYW1 binds zinc and is necessary for RNA editing of ndhD-1 [J].
Boussardon, Clement ;
Avon, Alexandra ;
Kindgren, Peter ;
Bond, Charles S. ;
Challenor, Michael ;
Lurin, Claire ;
Small, Ian .
NEW PHYTOLOGIST, 2014, 203 (04) :1090-1095
[6]   Two Interacting Proteins Are Necessary for the Editing of the NdhD-1 Site in Arabidopsis Plastids [J].
Boussardon, Clement ;
Salone, Veronique ;
Avon, Alexandra ;
Berthome, Richard ;
Hammani, Kamel ;
Okuda, Kenji ;
Shikanai, Toshiharu ;
Small, Ian ;
Lurin, Claire .
PLANT CELL, 2012, 24 (09) :3684-3694
[7]   LPA66 Is Required for Editing psbF Chloroplast Transcripts in Arabidopsis [J].
Cai, Wenhe ;
Ji, Daili ;
Peng, Lianwei ;
Guo, Jinkui ;
Ma, Jinfang ;
Zou, Meijuan ;
Lu, Congming ;
Zhang, Lixin .
PLANT PHYSIOLOGY, 2009, 150 (03) :1260-1271
[8]   CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts [J].
Chateigner-Boutin, Anne-Laure ;
Ramos-Vega, Maricela ;
Guevara-Garcia, Arturo ;
Andres, Charles ;
Gutierrez-Nava, Maria de la Luz ;
Cantero, Araceli ;
Delannoy, Etienne ;
Jimenez, Luis Felipe ;
Lurin, Claire ;
Small, Ian ;
Leon, Patricia .
PLANT JOURNAL, 2008, 56 (04) :590-602
[9]   The evolutionarily conserved multifunctional glycine-rich RNA-binding proteins play key roles in development and stress adaptation [J].
Ciuzan, Oana ;
Hancock, John ;
Pamfil, Doru ;
Wilson, Ian ;
Ladomery, Michael .
PHYSIOLOGIA PLANTARUM, 2015, 153 (01) :1-11
[10]   An artificial PPR scaffold for programmable RNA recognition [J].
Coquille, Sandrine ;
Filipovska, Aleksandra ;
Chia, Tiongsun ;
Rajappa, Lional ;
Lingford, James P. ;
Razif, Muhammad F. M. ;
Thore, Stephane ;
Rackham, Oliver .
NATURE COMMUNICATIONS, 2014, 5