Identification of the 5′ terminal sequence of the SAR-55 and MEX-14 strains of hepatitis E virus and confirmation that the genome is capped

被引:35
作者
Zhang, MD
Purcell, RH
Emerson, SU [1 ]
机构
[1] NIAID, Hepatitis Sect, Infect Dis Lab, NIH, Bethesda, MD 20892 USA
[2] NIAID, Mol Hepatitis Sect, Infect Dis Lab, NIH, Bethesda, MD 20892 USA
关键词
cap-dependent RACE; conserved; 5; termini; Burmese strain;
D O I
10.1002/jmv.2032
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Hepatitis E virus (HEV) is a nonenveloped virus with a genome of sing le-stranded, positive-sense RNA. The 5 ' terminal sequence of two HEV strains (SAR-55 and MEX-14) was determined by a 5 ' RNA ligase-mediated rapid amplification of cDNA ends (RACE) method designed to select capped RNAs. The 5 ' noncoding region of the SAR-55 and MEX-14 strains were amplified, confirming that the genomic RNA of HEV is capped. The 5 ' noncoding region of the SAR-55 strain had 25 nucleotides, which is two less than reported for the Burmese strain, and that of the MEX-14 strain had 24 nucleotides, which is 21 more than reported previously [Huang et al., 1992]. (C) 2001 Wiley-Liss, Inc.
引用
收藏
页码:293 / 295
页数:3
相关论文
共 12 条
[1]  
Donati MC, 1997, VIRAL HEPATITIS LIVE, P313
[2]   MOLECULAR-CLONING AND SEQUENCING OF THE MEXICO ISOLATE OF HEPATITIS-E VIRUS (HEV) [J].
HUANG, CC ;
NGUYEN, D ;
FERNANDEZ, J ;
YUN, KY ;
FRY, KE ;
BRADLEY, DW ;
TAM, AW ;
REYES, GR .
VIROLOGY, 1992, 191 (02) :550-558
[3]   Expression in animal cells and characterization of the hepatitis E virus structural proteins [J].
Jameel, S ;
Zafrullah, M ;
Ozdener, MH ;
Panda, SK .
JOURNAL OF VIROLOGY, 1996, 70 (01) :207-216
[4]   Evidence that the genomic RNA of hepatitis E virus is capped [J].
Kabrane-Lazizi, Y ;
Meng, XJ ;
Purcell, RH ;
Emerson, SU .
JOURNAL OF VIROLOGY, 1999, 73 (10) :8848-8850
[5]  
Purcell R.H., 1996, FIELDS VIROLOGY, V3rd ed., P2831
[6]  
REYES GR, 1990, SCIENCE, V247, P1336
[7]   The sequence and phylogenetic analysis of a novel hepatitis E virus isolated from a patient with acute hepatitis reported in the United States [J].
Schlauder, GG ;
Dawson, GJ ;
Erker, JC ;
Kwo, PY ;
Knigge, MF ;
Smalley, DL ;
Rosenblatt, JE ;
Desai, SM ;
Mushahwar, IK .
JOURNAL OF GENERAL VIROLOGY, 1998, 79 :447-456
[8]   HEPATITIS-E VIRUS (HEV) - MOLECULAR-CLONING AND SEQUENCING OF THE FULL-LENGTH VIRAL GENOME [J].
TAM, AW ;
SMITH, MM ;
GUERRA, ME ;
HUANG, CC ;
BRADLEY, DW ;
FRY, KE ;
REYES, GR .
VIROLOGY, 1991, 185 (01) :120-131
[9]   CHARACTERIZATION OF A PROTOTYPE STRAIN OF HEPATITIS-E VIRUS [J].
TSAREV, SA ;
EMERSON, SU ;
REYES, GR ;
TSAREVA, TS ;
LEGTERS, LJ ;
MALIK, IA ;
IQBAL, M ;
PURCELL, RH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (02) :559-563
[10]   The complete sequence of hepatitis E virus genotype 4 reveals an alternative strategy for translation of open reading frames 2 and 3 [J].
Wang, YC ;
Zhang, HY ;
Ling, R ;
Li, HM ;
Harrison, TJ .
JOURNAL OF GENERAL VIROLOGY, 2000, 81 :1675-1686