On the Discordance of Metabolomics with Proteomics and Transcriptomics: Coping with Increasing Complexity in Logic, Chemistry, and Network Interactions

被引:150
作者
Fernie, Alisdair R. [1 ]
Stitt, Mark [1 ]
机构
[1] Max Planck Inst Mol Pflanzenphysiol, D-14476 Potsdam, Germany
关键词
HETEROTROPHIC ARABIDOPSIS CELLS; MASS-SPECTROMETRY; ENZYME-ACTIVITIES; DIURNAL CYCLES; CALVIN CYCLE; METABOLITE; SUCROSE; INTEGRATION; THALIANA; REVEALS;
D O I
10.1104/pp.112.193235
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
引用
收藏
页码:1139 / 1145
页数:7
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共 67 条
  • [1] Mass spectrometry-based proteomics
    Aebersold, R
    Mann, M
    [J]. NATURE, 2003, 422 (6928) : 198 - 207
  • [2] The importance of uniformity in reporting protein-function data
    Apweiler, R
    Cornish-Bowden, A
    Hofmeyr, JHS
    Kettner, C
    Leyh, TS
    Schomburg, D
    Tipton, K
    [J]. TRENDS IN BIOCHEMICAL SCIENCES, 2005, 30 (01) : 11 - 12
  • [3] In silico atomic tracing by substrate-product relationships in Escherichia coli intermediary metabolism
    Arita, M
    [J]. GENOME RESEARCH, 2003, 13 (11) : 2455 - 2466
  • [4] Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations
    Arrivault, Stephanie
    Guenther, Manuela
    Ivakov, Alexander
    Feil, Regina
    Vosloh, Daniel
    van Dongen, Joost T.
    Sulpice, Ronan
    Stitt, Mark
    [J]. PLANT JOURNAL, 2009, 59 (05) : 824 - 839
  • [5] Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics
    Baerenfaller, Katja
    Grossmann, Jonas
    Grobei, Monica A.
    Hull, Roger
    Hirsch-Hoffmann, Matthias
    Yalovsky, Shaul
    Zimmermann, Philip
    Grossniklaus, Ueli
    Gruissem, Wilhelm
    Baginsky, Sacha
    [J]. SCIENCE, 2008, 320 (5878) : 938 - 941
  • [6] PlantMetabolomics.org: A Web Portal for Plant Metabolomics Experiments
    Bais, Preeti
    Moon, Stephanie M.
    He, Kun
    Leitao, Ricardo
    Dreher, Kate
    Walk, Tom
    Sucaet, Yves
    Barkan, Lenore
    Wohlgemuth, Gert
    Roth, Mary R.
    Wurtele, Eve Syrkin
    Dixon, Philip
    Fiehn, Oliver
    Lange, B. Markus
    Shulaev, Vladimir
    Sumner, Lloyd W.
    Welti, Ruth
    Nikolau, Basil J.
    Rhee, Seung Y.
    Dickerson, Julie A.
    [J]. PLANT PHYSIOLOGY, 2010, 152 (04) : 1807 - 1816
  • [7] Network biology:: Understanding the cell's functional organization
    Barabási, AL
    Oltvai, ZN
    [J]. NATURE REVIEWS GENETICS, 2004, 5 (02) : 101 - U15
  • [8] Normal growth of Arabidopsis requires cytosolic invertase but not sucrose synthase
    Barratt, D. H. Paul
    Derbyshire, Paul
    Findlay, Kim
    Pike, Marilyn
    Wellner, Nikolaus
    Lunn, John
    Feil, Regina
    Simpson, Clare
    Maule, Andrew J.
    Smith, Alison M.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (31) : 13124 - 13129
  • [9] The metabolic response of heterotrophic Arabidopsis cells to oxidative stress
    Baxter, Charles J.
    Redestig, Henning
    Schauer, Nicolas
    Repsilber, Dirk
    Patil, Kiran R.
    Nielsen, Jens
    Selbig, Joachim
    Liu, Junli
    Fernie, Alisdair R.
    Sweetlove, Lee J.
    [J]. PLANT PHYSIOLOGY, 2007, 143 (01) : 312 - 325
  • [10] A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling
    Blagoev, B
    Kratchmarova, I
    Ong, SE
    Nielsen, M
    Foster, LJ
    Mann, M
    [J]. NATURE BIOTECHNOLOGY, 2003, 21 (03) : 315 - 318