共 67 条
On the Discordance of Metabolomics with Proteomics and Transcriptomics: Coping with Increasing Complexity in Logic, Chemistry, and Network Interactions
被引:150
作者:

Fernie, Alisdair R.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Mol Pflanzenphysiol, D-14476 Potsdam, Germany Max Planck Inst Mol Pflanzenphysiol, D-14476 Potsdam, Germany

Stitt, Mark
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Mol Pflanzenphysiol, D-14476 Potsdam, Germany Max Planck Inst Mol Pflanzenphysiol, D-14476 Potsdam, Germany
机构:
[1] Max Planck Inst Mol Pflanzenphysiol, D-14476 Potsdam, Germany
关键词:
HETEROTROPHIC ARABIDOPSIS CELLS;
MASS-SPECTROMETRY;
ENZYME-ACTIVITIES;
DIURNAL CYCLES;
CALVIN CYCLE;
METABOLITE;
SUCROSE;
INTEGRATION;
THALIANA;
REVEALS;
D O I:
10.1104/pp.112.193235
中图分类号:
Q94 [植物学];
学科分类号:
071001 ;
摘要:
引用
收藏
页码:1139 / 1145
页数:7
相关论文
共 67 条
- [1] Mass spectrometry-based proteomics[J]. NATURE, 2003, 422 (6928) : 198 - 207Aebersold, R论文数: 0 引用数: 0 h-index: 0机构: Inst Syst Biol, Seattle, WA 98103 USAMann, M论文数: 0 引用数: 0 h-index: 0机构: Inst Syst Biol, Seattle, WA 98103 USA
- [2] The importance of uniformity in reporting protein-function data[J]. TRENDS IN BIOCHEMICAL SCIENCES, 2005, 30 (01) : 11 - 12Apweiler, R论文数: 0 引用数: 0 h-index: 0机构: Albert Einstein Coll Med, Dept Biochem, Bronx, NY 10461 USACornish-Bowden, A论文数: 0 引用数: 0 h-index: 0机构: Albert Einstein Coll Med, Dept Biochem, Bronx, NY 10461 USAHofmeyr, JHS论文数: 0 引用数: 0 h-index: 0机构: Albert Einstein Coll Med, Dept Biochem, Bronx, NY 10461 USAKettner, C论文数: 0 引用数: 0 h-index: 0机构: Albert Einstein Coll Med, Dept Biochem, Bronx, NY 10461 USALeyh, TS论文数: 0 引用数: 0 h-index: 0机构: Albert Einstein Coll Med, Dept Biochem, Bronx, NY 10461 USASchomburg, D论文数: 0 引用数: 0 h-index: 0机构: Albert Einstein Coll Med, Dept Biochem, Bronx, NY 10461 USATipton, K论文数: 0 引用数: 0 h-index: 0机构: Albert Einstein Coll Med, Dept Biochem, Bronx, NY 10461 USA
- [3] In silico atomic tracing by substrate-product relationships in Escherichia coli intermediary metabolism[J]. GENOME RESEARCH, 2003, 13 (11) : 2455 - 2466Arita, M论文数: 0 引用数: 0 h-index: 0机构: Univ Tokyo, Fac Frontier Sci, Dept Computat Biol, Tokyo, Japan Univ Tokyo, Fac Frontier Sci, Dept Computat Biol, Tokyo, Japan
- [4] Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations[J]. PLANT JOURNAL, 2009, 59 (05) : 824 - 839Arrivault, Stephanie论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, GermanyGuenther, Manuela论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, GermanyIvakov, Alexander论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, GermanyFeil, Regina论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, GermanyVosloh, Daniel论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germanyvan Dongen, Joost T.论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, GermanySulpice, Ronan论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, GermanyStitt, Mark论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany
- [5] Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics[J]. SCIENCE, 2008, 320 (5878) : 938 - 941论文数: 引用数: h-index:机构:论文数: 引用数: h-index:机构:论文数: 引用数: h-index:机构:论文数: 引用数: h-index:机构:论文数: 引用数: h-index:机构:论文数: 引用数: h-index:机构:Zimmermann, Philip论文数: 0 引用数: 0 h-index: 0机构: ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, Switzerland ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, SwitzerlandGrossniklaus, Ueli论文数: 0 引用数: 0 h-index: 0机构: Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland Univ Zurich, Inst Plant Biol, CH-8008 Zurich, Switzerland ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, SwitzerlandGruissem, Wilhelm论文数: 0 引用数: 0 h-index: 0机构: ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland Funct Genom Ctr Zurich, CH-8057 Zurich, Switzerland ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, SwitzerlandBaginsky, Sacha论文数: 0 引用数: 0 h-index: 0机构: ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, Switzerland
- [6] PlantMetabolomics.org: A Web Portal for Plant Metabolomics Experiments[J]. PLANT PHYSIOLOGY, 2010, 152 (04) : 1807 - 1816Bais, Preeti论文数: 0 引用数: 0 h-index: 0机构: Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USA Iowa State Univ, Bioinformat & Computat Biol Lab, Ames, IA 50011 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USAMoon, Stephanie M.论文数: 0 引用数: 0 h-index: 0机构: Iowa State Univ, Dept Biochem Biophys & Mol Biol, Ames, IA 50011 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USAHe, Kun论文数: 0 引用数: 0 h-index: 0机构: Carnegie Inst Sci, Dept Plant Biol, Stanford, CA 94305 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USALeitao, Ricardo论文数: 0 引用数: 0 h-index: 0机构: Carnegie Inst Sci, Dept Plant Biol, Stanford, CA 94305 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USADreher, Kate论文数: 0 引用数: 0 h-index: 0机构: Carnegie Inst Sci, Dept Plant Biol, Stanford, CA 94305 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USAWalk, Tom论文数: 0 引用数: 0 h-index: 0机构: Carnegie Inst Sci, Dept Plant Biol, Stanford, CA 94305 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USASucaet, Yves论文数: 0 引用数: 0 h-index: 0机构: Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USA Iowa State Univ, Bioinformat & Computat Biol Lab, Ames, IA 50011 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USABarkan, Lenore论文数: 0 引用数: 0 h-index: 0机构: Washington State Univ, Inst Biol Chem, Pullman, WA 99164 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USAWohlgemuth, Gert论文数: 0 引用数: 0 h-index: 0机构: Univ Calif Davis, Dept Mol & Cellular Biol, Davis, CA 95616 USA Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USARoth, Mary R.论文数: 0 引用数: 0 h-index: 0机构: Kansas State Univ, Div Biol, Manhattan, KS 66506 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USAWurtele, Eve Syrkin论文数: 0 引用数: 0 h-index: 0机构: Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USA Iowa State Univ, Dept Genet Dev & Cell Biol, Ames, IA 50011 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USADixon, Philip论文数: 0 引用数: 0 h-index: 0机构: Iowa State Univ, Dept Stat, Ames, IA 50011 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USAFiehn, Oliver论文数: 0 引用数: 0 h-index: 0机构: Univ Calif Davis, Dept Mol & Cellular Biol, Davis, CA 95616 USA Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USALange, B. Markus论文数: 0 引用数: 0 h-index: 0机构: Washington State Univ, Inst Biol Chem, Pullman, WA 99164 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USAShulaev, Vladimir论文数: 0 引用数: 0 h-index: 0机构: Virginia Polytech Inst & State Univ, Virginia Bioinformat Inst, Blacksburg, VA 24061 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USASumner, Lloyd W.论文数: 0 引用数: 0 h-index: 0机构: Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USAWelti, Ruth论文数: 0 引用数: 0 h-index: 0机构: Kansas State Univ, Div Biol, Manhattan, KS 66506 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USANikolau, Basil J.论文数: 0 引用数: 0 h-index: 0机构: Iowa State Univ, Dept Biochem Biophys & Mol Biol, Ames, IA 50011 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USARhee, Seung Y.论文数: 0 引用数: 0 h-index: 0机构: Carnegie Inst Sci, Dept Plant Biol, Stanford, CA 94305 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USADickerson, Julie A.论文数: 0 引用数: 0 h-index: 0机构: Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USA Iowa State Univ, Dept Elect & Comp Engn, Ames, IA 50011 USA Iowa State Univ, Bioinformat & Computat Biol Program, Ames, IA 50011 USA
- [7] Network biology:: Understanding the cell's functional organization[J]. NATURE REVIEWS GENETICS, 2004, 5 (02) : 101 - U15Barabási, AL论文数: 0 引用数: 0 h-index: 0机构: Univ Notre Dame, Dept Phys, Notre Dame, IN 46556 USAOltvai, ZN论文数: 0 引用数: 0 h-index: 0机构: Univ Notre Dame, Dept Phys, Notre Dame, IN 46556 USA
- [8] Normal growth of Arabidopsis requires cytosolic invertase but not sucrose synthase[J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (31) : 13124 - 13129Barratt, D. H. Paul论文数: 0 引用数: 0 h-index: 0机构: John Innes Ctr, Norwich NR4 7UH, Norfolk, England John Innes Ctr, Norwich NR4 7UH, Norfolk, EnglandDerbyshire, Paul论文数: 0 引用数: 0 h-index: 0机构: John Innes Ctr, Norwich NR4 7UH, Norfolk, England John Innes Ctr, Norwich NR4 7UH, Norfolk, EnglandFindlay, Kim论文数: 0 引用数: 0 h-index: 0机构: John Innes Ctr, Norwich NR4 7UH, Norfolk, England John Innes Ctr, Norwich NR4 7UH, Norfolk, EnglandPike, Marilyn论文数: 0 引用数: 0 h-index: 0机构: John Innes Ctr, Norwich NR4 7UH, Norfolk, England John Innes Ctr, Norwich NR4 7UH, Norfolk, EnglandWellner, Nikolaus论文数: 0 引用数: 0 h-index: 0机构: Inst Food Res, Norwich NR4 7UH, Norfolk, England John Innes Ctr, Norwich NR4 7UH, Norfolk, EnglandLunn, John论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany John Innes Ctr, Norwich NR4 7UH, Norfolk, EnglandFeil, Regina论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany John Innes Ctr, Norwich NR4 7UH, Norfolk, EnglandSimpson, Clare论文数: 0 引用数: 0 h-index: 0机构: John Innes Ctr, Norwich NR4 7UH, Norfolk, England John Innes Ctr, Norwich NR4 7UH, Norfolk, EnglandMaule, Andrew J.论文数: 0 引用数: 0 h-index: 0机构: John Innes Ctr, Norwich NR4 7UH, Norfolk, England John Innes Ctr, Norwich NR4 7UH, Norfolk, EnglandSmith, Alison M.论文数: 0 引用数: 0 h-index: 0机构: John Innes Ctr, Norwich NR4 7UH, Norfolk, England John Innes Ctr, Norwich NR4 7UH, Norfolk, England
- [9] The metabolic response of heterotrophic Arabidopsis cells to oxidative stress[J]. PLANT PHYSIOLOGY, 2007, 143 (01) : 312 - 325Baxter, Charles J.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Dept Plant Sci, Oxford OX1 3RB, EnglandRedestig, Henning论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Dept Plant Sci, Oxford OX1 3RB, EnglandSchauer, Nicolas论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Dept Plant Sci, Oxford OX1 3RB, EnglandRepsilber, Dirk论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Dept Plant Sci, Oxford OX1 3RB, EnglandPatil, Kiran R.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Dept Plant Sci, Oxford OX1 3RB, EnglandNielsen, Jens论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Dept Plant Sci, Oxford OX1 3RB, EnglandSelbig, Joachim论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Dept Plant Sci, Oxford OX1 3RB, EnglandLiu, Junli论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Dept Plant Sci, Oxford OX1 3RB, EnglandFernie, Alisdair R.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Dept Plant Sci, Oxford OX1 3RB, EnglandSweetlove, Lee J.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Dept Plant Sci, Oxford OX1 3RB, England
- [10] A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling[J]. NATURE BIOTECHNOLOGY, 2003, 21 (03) : 315 - 318Blagoev, B论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, DenmarkKratchmarova, I论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, DenmarkOng, SE论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, DenmarkNielsen, M论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, DenmarkFoster, LJ论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, DenmarkMann, M论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark