Harnessing the potential of natural products in drug discovery from a cheminformatics vantage point

被引:28
作者
Rodrigues, Tiago [1 ]
机构
[1] Univ Lisbon, Inst Med Mol, Fac Med, Ave Prof Egas Moniz, P-1649028 Lisbon, Portugal
关键词
DE-NOVO DESIGN; COMPUTATIONAL TARGET PREDICTION; BIOLOGY-ORIENTED SYNTHESIS; RELEVANT CHEMICAL SPACE; MACROMOLECULAR TARGETS; CALCIUM-CHANNELS; LIGAND DISCOVERY; INHIBITORS; MOLECULES; FRAGMENTS;
D O I
10.1039/c7ob02193c
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
Natural products (NPs) present a privileged source of inspiration for chemical probe and drug design. Despite the biological pre-validation of the underlying molecular architectures and their relevance in drug discovery, the poor accessibility to NPs, complexity of the synthetic routes and scarce knowledge of their macromolecular counterparts in phenotypic screens still hinder their broader exploration. Cheminformatics algorithms now provide a powerful means of circumventing the abovementioned challenges and unlocking the full potential of NPs in a drug discovery context. Herein, I discuss recent advances in the computer-assisted design of NP mimics and how artificial intelligence may accelerate future NP-inspired molecular medicine.
引用
收藏
页码:9275 / 9282
页数:8
相关论文
共 74 条
  • [1] (-)-Englerin A is a Potent and Selective Activator of TRPC4 and TRPC5 Calcium Channels
    Akbulut, Yasemin
    Gaunt, Hannah J.
    Muraki, Katsuhiko
    Ludlow, Melanie J.
    Amer, Mohamed S.
    Bruns, Alexander
    Vasudev, Naveen S.
    Radtke, Lea
    Willot, Matthieu
    Hahn, Sven
    Seitz, Tobias
    Ziegler, Slava
    Christmann, Mathias
    Beech, David J.
    Waldmann, Herbert
    [J]. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2015, 54 (12) : 3787 - 3791
  • [2] Identification of Pim Kinases as Novel Targets for PJ34 with Confounding Effects in PARP Biology
    Antolin, Albert A.
    Jalencas, Xavier
    Yelamos, Jose
    Mestres, Jordi
    [J]. ACS CHEMICAL BIOLOGY, 2012, 7 (12) : 1962 - 1967
  • [3] Discovery of Depsides and Depsidones from Lichen as Potent Inhibitors of Microsomal Prostaglandin E2 Synthase-1 Using Pharmacophore Models
    Bauer, Julia
    Waltenberger, Birgit
    Noha, Stefan M.
    Schuster, Daniela
    Rollinger, Judith M.
    Boustie, Joel
    Chollet, Marylene
    Stuppner, Hermann
    Werz, Oliver
    [J]. CHEMMEDCHEM, 2012, 7 (12) : 2077 - 2081
  • [4] Bickerton GR, 2012, NAT CHEM, V4, P90, DOI [10.1038/NCHEM.1243, 10.1038/nchem.1243]
  • [5] Functionally Optimized Neuritogenic Farinosone C Analogs: SAR-Study and Investigations on Their Mode of Action
    Burch, Patrick
    Chicca, Andrea
    Gertsch, Juerg
    Gademann, Karl
    [J]. ACS MEDICINAL CHEMISTRY LETTERS, 2014, 5 (02): : 172 - 177
  • [6] TCM Database@Taiwan: The World's Largest Traditional Chinese Medicine Database for Drug Screening In Silico
    Chen, Calvin Yu-Chian
    [J]. PLOS ONE, 2011, 6 (01):
  • [7] Data Resources for the Computer-Guided Discovery of Bioactive Natural Products
    Chen, Ya
    Kops, Christina de Bruyn
    Kirchmair, Johannes
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2017, 57 (09) : 2099 - 2111
  • [8] Small molecules of different origins have distinct distributions of structural complexity that correlate with protein-binding profiles
    Clemons, Paul A.
    Bodycombe, Nicole E.
    Carrinski, Hyman A.
    Wilson, J. Anthony
    Shamji, Alykhan F.
    Wagner, Bridget K.
    Koehler, Angela N.
    Schreiber, Stuart L.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (44) : 18787 - 18792
  • [9] Capturing Biological Activity in Natural Product Fragments by Chemical Synthesis
    Crane, Erika A.
    Gademann, Karl
    [J]. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2016, 55 (12) : 3882 - 3902
  • [10] Reverse pharmacognosy:: Identifying biological 3 properties for plants by means of their molecule constituents:: Application to meranzin
    Do, Quoc-Tuan
    Lamy, Cecile
    Renimel, Isabelle
    Sauvan, Nancy
    Andre, Patrice
    Himbert, Franck
    Morin-Allory, Luc
    Bernard, Philippe
    [J]. PLANTA MEDICA, 2007, 73 (12) : 1235 - 1240