Single-Cell Analyses Inform Mechanisms of Myeloid-Targeted Therapies in Colon Cancer

被引:1011
作者
Zhang, Lei [1 ]
Li, Ziyi [2 ,3 ]
Skrzypczynska, Katarzyna M. [4 ,5 ]
Fang, Qiao [1 ]
Zhang, Wei [6 ]
O'Brien, Sarah A. [4 ,5 ]
He, Yao [1 ]
Wang, Lynn [4 ,5 ]
Zhang, Qiming [2 ,3 ]
Kim, Aeryon [4 ,5 ]
Gao, Ranran [2 ,3 ]
Orf, Jessica [4 ,5 ]
Wang, Tao [2 ,3 ]
Sawant, Deepali [4 ,5 ]
Kang, Jiajinlong [2 ,3 ]
Bhatt, Dev [4 ,5 ]
Lu, Daniel [4 ,5 ]
Li, Chi-Ming [4 ,5 ]
Rapaport, Aaron S. [4 ,5 ]
Perez, Kristy [4 ,5 ]
Ye, Yingjiang [6 ]
Wang, Shan [6 ]
Hu, Xueda [2 ,3 ,7 ]
Ren, Xianwen [2 ,3 ]
Ouyang, Wenjun [4 ,5 ]
Shen, Zhanlong [6 ]
Egen, Jackson G. [4 ,5 ]
Zhang, Zemin [1 ,2 ,3 ]
Yu, Xin [4 ,5 ]
机构
[1] Peking Univ, Peking Tsinghua Ctr Life Sci, Beijing Adv Innovat Ctr Genom, Beijing 100871, Peoples R China
[2] Peking Univ, BIOPIC, Beijing 100871, Peoples R China
[3] Peking Univ, Sch Life Sci, Beijing 100871, Peoples R China
[4] Amgen Inc, Amgen Res, Dept Inflammat & Oncol, San Francisco, CA 94080 USA
[5] Amgen Inc, Amgen Res, Genome Anal Unit, San Francisco, CA 94080 USA
[6] Peking Univ, Dept Gastroenterol Surg, Peoples Hosp, Beijing 100044, Peoples R China
[7] Analyt Biosci Ltd, Beijing 100084, Peoples R China
基金
中国国家自然科学基金;
关键词
TUMOR-ASSOCIATED MACROPHAGES; DENDRITIC CELLS; HETEROGENEITY; TISSUE; LANDSCAPE; ANTIBODY; INNATE; TRANSCRIPTOMES; ADENOCARCINOMA; IMMUNOTHERAPY;
D O I
10.1016/j.cell.2020.03.048
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Single-cell RNA sequencing (scRNA-seq) is a powerful tool for defining cellular diversity in tumors, but its application toward dissecting mechanisms underlying immune-modulating therapies is scarce. We performed scRNA-seq analyses on immune and stromal populations from colorectal cancer patients, identifying specific macrophage and conventional dendritic cell (cDC) subsets as key mediators of cellular cross-talk in the tumor microenvironment. Defining comparable myeloid populations in mouse tumors enabled characterization of their response to myeloid-targeted immunotherapy. Treatment with anti-CSF1R preferentially depleted macrophages with an inflammatory signature but spared macrophage populations that in mouse and human expresses pro-angiogenic/tumorigenic genes. Treatment with a CD40 agonist antibody preferentially activated a cDC population and increased Bhlhe40(+) Th1-like cells and CD8(+) memory T cells. Our comprehensive analysis of key myeloid subsets in human and mouse identifies critical cellular interactions regulating tumor immunity and defines mechanisms underlying myeloid-targeted immunotherapies currently undergoing clinical testing.
引用
收藏
页码:442 / +
页数:46
相关论文
共 81 条
[61]   Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis [J].
Smillie, Christopher S. ;
Biton, Moshe ;
Ordovas-Montanes, Jose ;
Sullivan, Ken M. ;
Burgin, Grace ;
Graham, Daniel B. ;
Herbst, Rebecca H. ;
Rogel, Noga ;
Slyper, Michel ;
Waldman, Julia ;
Sud, Malika ;
Andrews, Elizabeth ;
Velonias, Gabriella ;
Haber, Adam L. ;
Jagadeesh, Karthik ;
Vickovic, Sanja ;
Yao, Junmei ;
Stevens, Christine ;
Dionne, Danielle ;
Nguyen, Lan T. ;
Villani, Alexandra-Chloe ;
Hofree, Matan ;
Creasey, Elizabeth A. ;
Huang, Hailiang ;
Rozenblatt-Rosen, Orit ;
Garber, John J. ;
Khalili, Hamed ;
Desch, A. Nicole ;
Daly, Mark J. ;
Ananthakrishnan, Ashwin N. ;
Shalek, Alex K. ;
Xavier, Ramnik J. ;
Regev, Aviv .
CELL, 2019, 178 (03) :714-+
[62]   Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq [J].
Tirosh, Itay ;
Izar, Benjamin ;
Prakadan, Sanjay M. ;
Wadsworth, Marc H., II ;
Treacy, Daniel ;
Trombetta, John J. ;
Rotem, Asaf ;
Rodman, Christopher ;
Lian, Christine ;
Murphy, George ;
Fallahi-Sichani, Mohammad ;
Dutton-Regester, Ken ;
Lin, Jia-Ren ;
Cohen, Ofir ;
Shah, Parin ;
Lu, Diana ;
Genshaft, Alex S. ;
Hughes, Travis K. ;
Ziegler, Carly G. K. ;
Kazer, Samuel W. ;
Gaillard, Aleth ;
Kolb, Kellie E. ;
Villani, Alexandra-Chloe ;
Johannessen, Cory M. ;
Andreev, Aleksandr Y. ;
Van Allen, Eliezer M. ;
Bertagnolli, Monica ;
Sorger, Peter K. ;
Sullivan, Ryan J. ;
Flaherty, Keith T. ;
Frederick, Dennie T. ;
Jane-Valbuena, Judit ;
Yoon, Charles H. ;
Rozenblatt-Rosen, Orit ;
Shalek, Alex K. ;
Regev, Aviv ;
Garraway, Levi A. .
SCIENCE, 2016, 352 (6282) :189-196
[63]   Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq [J].
Venteicher, Andrew S. ;
Tirosh, Itay ;
Hebert, Christine ;
Yizhak, Keren ;
Neftel, Cyril ;
Filbin, Mariella G. ;
Hovestadt, Volker ;
Escalante, Leah E. ;
Shaw, McKenzie L. ;
Rodman, Christopher ;
Gillespie, Shawn M. ;
Dionne, Danielle ;
Luo, Christina C. ;
Ravichandran, Hiranmayi ;
Mylvaganam, Ravindra ;
Mount, Christopher ;
Onozato, Maristela L. ;
Nahed, Brian V. ;
Wakimoto, Hiroaki ;
Curry, William T. ;
Iafrate, A. John ;
Rivera, Miguel N. ;
Frosch, Matthew P. ;
Golub, Todd R. ;
Brastianos, Priscilla K. ;
Getz, Gad ;
Patel, Anoop P. ;
Monje, Michelle ;
Cahill, Daniel P. ;
Rozenblatt-Rosen, Orit ;
Louis, David N. ;
Bernstein, Bradley E. ;
Regev, Aviv ;
Suva, Mario L. .
SCIENCE, 2017, 355 (6332)
[64]   Single-cell reconstruction of the early maternal-fetal interface in humans [J].
Vento-Tormo, Roser ;
Efremova, Mirjana ;
Botting, Rachel A. ;
Turco, Margherita Y. ;
Vento-Termo, Miquel ;
Meyer, Kerstin B. ;
Park, Jong-Eun ;
Stephenson, Emily ;
Polanski, Krzysztof ;
Goncalves, Angela ;
Gardner, Lucy ;
Holmqvist, Staffan ;
Henriksson, Johan ;
Zou, Angela ;
Sharkey, Andrew M. ;
Millar, Ben ;
Innes, Barbara ;
Wood, Laura ;
Wilbrey-Clark, Anna ;
Payne, Rebecca P. ;
Ivarsson, Martin A. ;
Lisgo, Steve ;
Filby, Andrew ;
Rowitch, David H. ;
Bulmer, Judith N. ;
Wright, Gavin J. ;
Stubbington, Michael J. T. ;
Haniffa, Muzlifah ;
Moffett, Ashley ;
Teichmann, Sarah A. .
NATURE, 2018, 563 (7731) :347-+
[65]   CD40 Agonist Antibodies in Cancer Immunotherapy [J].
Vonderheide, Robert H. .
ANNUAL REVIEW OF MEDICINE, VOL 71, 2020, 2020, 71 :47-58
[66]   Common markers of proliferation [J].
Whitfield, ML ;
George, LK ;
Grant, GD ;
Perou, CM .
NATURE REVIEWS CANCER, 2006, 6 (02) :99-106
[67]   The Immunobiology of the Interleukin-12 Family: Room for Discovery [J].
Wojno, Elia D. Tait ;
Hunter, Christopher A. ;
Stumhofer, Jason S. .
IMMUNITY, 2019, 50 (04) :851-870
[68]   PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells [J].
Wolf, F. Alexander ;
Hamey, Fiona K. ;
Plass, Mireya ;
Solana, Jordi ;
Dahlin, Joakim S. ;
Gottgens, Berthold ;
Rajewsky, Nikolaus ;
Simon, Lukas ;
Theis, Fabian J. .
GENOME BIOLOGY, 2019, 20 (1) :1-9
[69]   SCANPY: large-scale single-cell gene expression data analysis [J].
Wolf, F. Alexander ;
Angerer, Philipp ;
Theis, Fabian J. .
GENOME BIOLOGY, 2018, 19
[70]   Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data [J].
Wolock, Samuel L. ;
Lopez, Romain ;
Klein, Allon M. .
CELL SYSTEMS, 2019, 8 (04) :281-+