Complete Genome Sequence of Pediococcus pentosaceus Strain GDIAS 001

被引:1
作者
Song, Maopeng [1 ]
Wang, Yongfei [1 ]
Ma, Xianyong [2 ]
Deng, Dun [2 ]
机构
[1] Jinan Univ, Sch Life Sci, Dept Bioengn, Guangzhou, Peoples R China
[2] Guangdong Acad Agr Sci, South China Key Lab Anim Nutr & Feed, State Key Lab Anim Breeding,Poultry Meat Qual Qua, Minist Agr,Inst Anim Sci,Anim Breeding & Nutr Pub, Guangzhou, Peoples R China
基金
中国国家自然科学基金;
关键词
D O I
10.1128/MRA.01586-19
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Pediococcus pentosaceus strain GDIAS 001 was isolated from a tapioca sample in Guangzou, China. The genome of GDIAS 001 was assembled using single-molecule real-time (SMRT) sequencing, and it contains 1 chromosome of 1.83 Mbp and 1,835 protein-coding genes, 71 RNA genes, and 56 tRNA genes.
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页数:2
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共 18 条
[1]   PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies [J].
Akhter, Sajia ;
Aziz, Ramy K. ;
Edwards, Robert A. .
NUCLEIC ACIDS RESEARCH, 2012, 40 (16) :e126
[2]   VFDB: a reference database for bacterial virulence factors [J].
Chen, LH ;
Yang, J ;
Yu, J ;
Ya, ZJ ;
Sun, LL ;
Shen, Y ;
Jin, Q .
NUCLEIC ACIDS RESEARCH, 2005, 33 :D325-D328
[3]  
Chin CS, 2016, NAT METHODS, V13, P1050, DOI [10.1038/NMETH.4035, 10.1038/nmeth.4035]
[4]  
Chin CS, 2013, NAT METHODS, V10, P563, DOI [10.1038/NMETH.2474, 10.1038/nmeth.2474]
[5]   Effect of culture conditions on production of butter flavor compounds by Pediococcus pentosaceus and Lactobacillus acidophilus in semisolid maize-based cultures [J].
Escamilla-Hurtado, ML ;
Valdés-Martínez, SE ;
Soriano-Santos, J ;
Gómez-Pliego, R ;
Verde-Calvo, JR ;
Reyes-Dorantes, A ;
Tomasini-Campocosio, A .
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 2005, 105 (03) :305-316
[6]   Circlator: automated circularization of genome assemblies using long sequencing reads [J].
Hunt, Martin ;
De Silva, Nishadi ;
Otto, Thomas D. ;
Parkhill, Julian ;
Keane, Jacqueline A. ;
Harris, Simon R. .
GENOME BIOLOGY, 2015, 16
[7]   Prodigal: prokaryotic gene recognition and translation initiation site identification [J].
Hyatt, Doug ;
Chen, Gwo-Liang ;
LoCascio, Philip F. ;
Land, Miriam L. ;
Larimer, Frank W. ;
Hauser, Loren J. .
BMC BIOINFORMATICS, 2010, 11
[8]   Catabolism of Serine by Pediococcus acidilactici and Pediococcus pentosaceus [J].
Irmler, Stefan ;
Bavan, Tharmatha ;
Oberli, Andrea ;
Roetschi, Alexandra ;
Badertscher, Rene ;
Guggenbuehl, Barbara ;
Berthoud, Helene .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2013, 79 (04) :1309-1315
[9]   The effects of Lactobacillus buchneri 40788 and Pediococcus pentosaceus R1094 on the fermentation of corn silage [J].
Kleinschmit, D. H. ;
Kung, L., Jr. .
JOURNAL OF DAIRY SCIENCE, 2006, 89 (10) :3999-4004
[10]   RNAmmer:: consistent and rapid annotation of ribosomal RNA genes [J].
Lagesen, Karin ;
Hallin, Peter ;
Rodland, Einar Andreas ;
Stærfeldt, Hans-Henrik ;
Rognes, Torbjorn ;
Ussery, David W. .
NUCLEIC ACIDS RESEARCH, 2007, 35 (09) :3100-3108