Nucleosome destabilization in the epigenetic regulation of gene expression

被引:339
作者
Henikoff, Steven [1 ]
机构
[1] Fred Hutchinson Canc Res Ctr, Div Basic Sci, Howard Hughes Med Inst, Seattle, WA 98109 USA
关键词
D O I
10.1038/nrg2206
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Assembly, mobilization and disassembly of nucleosomes can influence the regulation of gene expression and other processes that act on eukaryotic DNA. Distinct nucleosome-assembly pathways deposit dimeric subunits behind the replication fork or at sites of active processes that mobilize pre-existing nucleosomes. Replication-coupled nucleosome assembly appears to be the default process that maintains silent chromatin, counteracted by active processes that destabilize nucleosomes. Nucleosome stability is regulated by the combined effects of nucleosome-positioning sequences, histone chaperones, ATP-dependent nucleosome remodellers, post-translational modifications and histone variants. Recent studies suggest that histone turnover helps to maintain continuous access to sequence-specific DNA-binding proteins that regulate epigenetic inheritance, providing a dynamic alternative to histone-marking models for the propagation of active chromatin.
引用
收藏
页码:15 / 26
页数:12
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共 122 条
[1]   Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PH05 and PH08 genes [J].
Adkins, MW ;
Howar, SR ;
Tyler, JK .
MOLECULAR CELL, 2004, 14 (05) :657-666
[2]   The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly [J].
Ahmad, K ;
Henikoff, S .
MOLECULAR CELL, 2002, 9 (06) :1191-1200
[3]   Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila [J].
Ahmad, K ;
Henikoff, S .
CELL, 2001, 104 (06) :839-847
[4]   Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome [J].
Albert, Istvan ;
Mavrich, Travis N. ;
Tomsho, Lynn P. ;
Qi, Ji ;
Zanton, Sara J. ;
Schuster, Stephan C. ;
Pugh, B. Franklin .
NATURE, 2007, 446 (7135) :572-576
[5]   Split decision: What happens to nucleosomes during DNA replication? [J].
Annunziato, AT .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (13) :12065-12068
[6]   Structure of the yeast histone H3-ASFI interaction: implications for chaperone mechanism, species-specific interactions, and epigenetics [J].
Antczak, Andrew J. ;
Tsubota, Toshiaki ;
Kaufman, Paul D. ;
Berger, James M. .
BMC STRUCTURAL BIOLOGY, 2006, 6
[7]   The Drosophila BRM complex facilitates global transcription by RNA polymerase II [J].
Armstrong, JA ;
Papoulas, O ;
Daubresse, G ;
Sperling, AS ;
Lis, JT ;
Scott, MP ;
Tamkun, JW .
EMBO JOURNAL, 2002, 21 (19) :5245-5254
[8]   High-resolution profiling of histone methylations in the human genome [J].
Barski, Artern ;
Cuddapah, Suresh ;
Cui, Kairong ;
Roh, Tae-Young ;
Schones, Dustin E. ;
Wang, Zhibin ;
Wei, Gang ;
Chepelev, Iouri ;
Zhao, Keji .
CELL, 2007, 129 (04) :823-837
[9]   FACT facilitates transcription-dependent nucleosome alteration [J].
Belotserkovskaya, R ;
Oh, S ;
Bondarenko, VA ;
Orphanides, G ;
Studitsky, VM ;
Reinberg, D .
SCIENCE, 2003, 301 (5636) :1090-1093
[10]   A bivalent chromatin structure marks key developmental genes in embryonic stem cells [J].
Bernstein, BE ;
Mikkelsen, TS ;
Xie, XH ;
Kamal, M ;
Huebert, DJ ;
Cuff, J ;
Fry, B ;
Meissner, A ;
Wernig, M ;
Plath, K ;
Jaenisch, R ;
Wagschal, A ;
Feil, R ;
Schreiber, SL ;
Lander, ES .
CELL, 2006, 125 (02) :315-326