ASBench: benchmarking sets for allosteric discovery

被引:81
作者
Huang, Wenkang [1 ]
Wang, Guanqiao [1 ]
Shen, Qiancheng [1 ]
Liu, Xinyi [1 ]
Lu, Shaoyong [1 ]
Geng, Lv [1 ]
Huang, Zhimin [1 ]
Zhang, Jian [1 ]
机构
[1] Shanghai Jiao Tong Univ, Dept Pathophysiol, Sch Med, Shanghai 200025, Peoples R China
基金
中国国家自然科学基金;
关键词
SITES;
D O I
10.1093/bioinformatics/btv169
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Allostery allows for the fine-tuning of protein function. Targeting allosteric sites is gaining increasing recognition as a novel strategy in drug design. The key challenge in the discovery of allosteric sites has strongly motivated the development of computational methods and thus high-quality, publicly accessible standard data have become indispensable. Here, we report benchmarking data for experimentally determined allosteric sites through a complex process, including a 'Core set' with 235 unique allosteric sites and a 'Core-Diversity set' with 147 structurally diverse allosteric sites. These benchmarking sets can be exploited to develop efficient computational methods to predict unknown allosteric sites in proteins and reveal unique allosteric ligand-protein interactions to guide allosteric drug design.
引用
收藏
页码:2598 / 2600
页数:3
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