Simulations of Asymmetric Membranes Illustrate Cooperative Leaflet Coupling and Lipid Adaptability

被引:29
作者
Blumer, Madison [1 ,2 ]
Harris, Sophia [1 ]
Li, Mengzhe [1 ,3 ]
Martinez, Luis [1 ]
Untereiner, Michael [1 ,4 ]
Saeta, Peter N. [1 ]
Carpenter, Timothy S. [5 ]
Ingolfsson, Helgi I. [5 ]
Bennett, W. F. Drew [5 ]
机构
[1] Harvey Mudd Coll, Claremont, CA 91711 USA
[2] Scripps Coll, Claremont, CA 91711 USA
[3] Claremont McKenna Coll, Claremont, CA 91711 USA
[4] Pomona Coll, Claremont, CA 91711 USA
[5] Lawrence Livermore Natl Lab, Biosci & Biotechnol Div, Biochem & Biophys Syst Grp, Livermore, CA 94550 USA
关键词
lipid membrane; membrane asymmetry; molecular dynamic simulations; cholesterol; multiscale modeling; LINEAR CONSTRAINT SOLVER; PHOSPHOLIPID FLIP-FLOP; PARTICLE MESH EWALD; MOLECULAR-DYNAMICS; COMPUTATIONAL LIPIDOMICS; ATOMISTIC SIMULATIONS; PORE FORMATION; FORCE-FIELD; CHOLESTEROL; MODEL;
D O I
10.3389/fcell.2020.00575
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Biological membranes are composed of lipid bilayers that are often asymmetric with regards to the lipid composition and/or aqueous solvent they separate. Studying lipid asymmetry both experimentally and computationally is challenging. Molecular dynamics simulations of lipid bilayers with asymmetry are difficult due to finite system sizes and time scales accessible to simulations. Due to the very slow flip-flop rate for phospholipids, one must first choose how many lipids are on each side of the bilayer, but the resulting bilayer may be unstable (or metastable) due to differing tensile and compressive forces between leaflets. Here we use molecular dynamics simulations to investigate a number of different asymmetric membrane systems, both with atomistic and coarse-grained models. Asymmetries studied include differences in number of lipids, lipid composition (unsaturated and saturated tails and different headgroups), and chemical gradients between the aqueous phases. Extensive analysis of the bilayers' properties such as area per lipid, density, and lateral pressure profiles are used to characterize bilayer asymmetry. We also address how cholesterol (which flip-flops relatively quickly) influences membrane asymmetries. Our results show how each leaflet is influenced by the other and can mitigate the structural changes to the bilayer overall structure. Cholesterol can respond to changes in bilayer asymmetry to alleviate some of the effect on the bilayer structure, but that will alter its leaflet distribution, which in turn affects its chemical potential. Ionic imbalances are shown to have a modest change in bilayer structure, despite large changes in the electrostatic potential. Bilayer asymmetry can also induce a modest electrostatic potential across the membrane. Our results highlight the importance of membrane asymmetry on bilayer properties, the influence of lipid headgroups, tails and cholesterol on asymmetry, and the ability of lipids to adapt to different environments.
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页数:17
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