Change in Epigenome-Wide DNA Methylation Over 9 Years and Subsequent Mortality: Results From the InCHIANTI Study

被引:30
作者
Moore, Ann Zenobia [1 ]
Hernandez, Dena G. [2 ]
Tanaka, Toshiko [1 ]
Pilling, Luke C. [3 ]
Nalls, Mike A. [2 ]
Bandinelli, Stefania [4 ]
Singleton, Andrew B. [2 ]
Ferrucci, Luigi [1 ]
机构
[1] NIA, Longitudinal Studies Sect, Translat Gerontol Branch, Baltimore, MD 21224 USA
[2] NIA, Lab Neurogenet, Bethesda, MD 20892 USA
[3] Univ Exeter, Sch Med, Epidemiol & Publ Hlth, Exeter EX4 4QJ, Devon, England
[4] Azienda Sanit Firenze, Geriatr Unit, Florence, Italy
来源
JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES | 2016年 / 71卷 / 08期
基金
美国国家卫生研究院;
关键词
Epigenome-wide DNA methylation; Chronological age; Survival; NF-KAPPA-B; HUMAN-DISEASE; EPIGENETICS; AGE;
D O I
10.1093/gerona/glv118
中图分类号
R592 [老年病学]; C [社会科学总论];
学科分类号
03 ; 0303 ; 100203 ;
摘要
Patterns of DNA methylation (DNAm) that track with aging have been identified. However, the relevance of these patterns for aging outcomes remains unclear. Longitudinal epigenome-wide DNAm information was obtained from the InCHIANTI study, a large representative European population. DNAm was evaluated using the Illumina HumanMethylation450 array on blood samples collected at baseline and 9-year follow-up: observations from 499 participants with paired longitudinal blood sample and information on differential blood count were included in analyses. A total of 56,579 markers were significantly associated with age in cross-sectional analysis of DNAm at year 9, 31,252 markers were changed significantly over the 9-year follow-up, and 16,987 markers were both cross-sectionally associated with age and significantly changed over time. Rates of change at 76 markers and year 9 level of DNAm at 88 markers were identified as strongly associated with mortality in Cox proportional hazard models adjusted for age and relevant covariates (mean follow-up time 4.4 years). Less than 0.05% of markers associated with age or that changed over time were also associated with mortality after adjusting for chronological age. Although the influence of DNAm on health and longevity remains unclear, these findings confirm that aging is associated cross-sectionally and longitudinally with robust and consistent patterns of methylation change.
引用
收藏
页码:1029 / 1035
页数:7
相关论文
共 25 条
[1]   Environmental exposures, epigenetics and cardiovascular disease [J].
Baccarelli, Andrea ;
Ghosh, Sanjukta .
CURRENT OPINION IN CLINICAL NUTRITION AND METABOLIC CARE, 2012, 15 (04) :323-329
[2]   Intra-individual change over time in DNA methylation with familial clustering [J].
Bjornsson, Hans T. ;
Sigurdsson, Martin I. ;
Fallin, M. Daniele ;
Irizarry, Rafael A. ;
Aspelund, Thor ;
Cui, Hengmi ;
Yu, Wenqiang ;
Rongione, Michael A. ;
Ekstrom, Tomas J. ;
Harris, Tamara B. ;
Launer, Lenore J. ;
Eiriksdottir, Gudny ;
Leppert, Mark F. ;
Sapienza, Carmen ;
Gudnason, Vilmundur ;
Feinberg, Andrew P. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2008, 299 (24) :2877-2883
[3]   An integrated epigenetic and genetic approach to common human disease [J].
Bjornsson, HT ;
Fallin, MD ;
Feinberg, AP .
TRENDS IN GENETICS, 2004, 20 (08) :350-358
[4]   Genetics of healthy aging and longevity [J].
Brooks-Wilson, Angela R. .
HUMAN GENETICS, 2013, 132 (12) :1323-1338
[5]   The development of inflammatory TH-17 cells requires interferon-regulatory factor 4 [J].
Bruestle, Anne ;
Heink, Sylvia ;
Huber, Magdalena ;
Rosenplaenter, Christine ;
Stadelmann, Christine ;
Yu, Philipp ;
Arpaia, Enrico ;
Mak, Tak W. ;
Kamradt, Thomas ;
Lohoff, Michael .
NATURE IMMUNOLOGY, 2007, 8 (09) :958-966
[6]   Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray [J].
Chen, Yi-an ;
Lemire, Mathieu ;
Choufani, Sanaa ;
Butcher, Darci T. ;
Grafodatskaya, Daria ;
Zanke, Brent W. ;
Gallinger, Steven ;
Hudson, Thomas J. ;
Weksberg, Rosanna .
EPIGENETICS, 2013, 8 (02) :203-209
[7]   The atypical PKCs in inflammation: NF-κB and beyond [J].
Diaz-Meco, Maria T. ;
Moscat, Jorge .
IMMUNOLOGICAL REVIEWS, 2012, 246 :154-167
[8]   Phenotypic plasticity and the epigenetics of human disease [J].
Feinberg, Andrew P. .
NATURE, 2007, 447 (7143) :433-440
[9]   Subsystems contributing to the decline in ability to walk: Bridging the gap between epidemiology and geriatric practice in the InCHIANTI study [J].
Ferrucci, L ;
Bandinelli, S ;
Benvenuti, E ;
Di Iorio, A ;
Macchi, C ;
Harris, TB ;
Guralnik, JM .
JOURNAL OF THE AMERICAN GERIATRICS SOCIETY, 2000, 48 (12) :1618-1625
[10]   Epigenetic differences arise during the lifetime of monozygotic twins [J].
Fraga, MF ;
Ballestar, E ;
Paz, MF ;
Ropero, S ;
Setien, F ;
Ballestart, ML ;
Heine-Suñer, D ;
Cigudosa, JC ;
Urioste, M ;
Benitez, J ;
Boix-Chornet, M ;
Sanchez-Aguilera, A ;
Ling, C ;
Carlsson, E ;
Poulsen, P ;
Vaag, A ;
Stephan, Z ;
Spector, TD ;
Wu, YZ ;
Plass, C ;
Esteller, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (30) :10604-10609