Engineering a 2D protein-DNA crystal

被引:148
作者
Malo, J
Mitchell, JC
Vénien-Bryan, C
Harris, JR
Wille, H
Sherratt, DJ
Turberfield, AJ
机构
[1] Univ Oxford, Dept Phys, Clarendon Lab, Oxford OX1 3PU, England
[2] Univ Oxford, Dept Biochem, Lab Mol Biophys, Oxford OX1 3QU, England
[3] Johannes Gutenberg Univ Mainz, Inst Zool, D-55099 Mainz, Germany
[4] Univ Calif San Francisco, Dept Neurol, San Francisco, CA 94143 USA
[5] Univ Calif San Francisco, Inst Neurodegenerat Dis, San Francisco, CA 94143 USA
基金
英国工程与自然科学研究理事会; 英国惠康基金;
关键词
DNA; electron microscopy; nanostructures; proteins; self-assembly;
D O I
10.1002/anie.200463027
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
(Figure Presented) Weaving with DNA: A DNA-binding protein was used to control the structure of a self-assembled 2D crystal. In the absence of protein, four oligonucleotides hybridize to form a Kagome lattice of interwoven double helices with p3 symmetry (see image). Addition of protein RuvA during assembly changes the symmetry and connectivity to give a DNA-protein crystal with an approximately square unit cell. © 2005 Wiley-VCH Verlag GmbH & Co. KGaA.
引用
收藏
页码:3057 / 3061
页数:5
相关论文
共 46 条
[1]   CRYO-ELECTRON MICROSCOPY OF VIRUSES [J].
ADRIAN, M ;
DUBOCHET, J ;
LEPAULT, J ;
MCDOWALL, AW .
NATURE, 1984, 308 (5954) :32-36
[2]   Crystal structure of the Holliday junction DNA in complex with a single RuvA tetramer [J].
Ariyoshi, M ;
Nishino, T ;
Iwasaki, H ;
Shinagawa, H ;
Morikawa, K .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (15) :8257-8262
[3]   ATOMIC-STRUCTURE OF THE RUVC RESOLVASE - A HOLLIDAY JUNCTION-SPECIFIC ENDONUCLEASE FROM ESCHERICHIA-COLI [J].
ARIYOSHI, M ;
VASSYLYEV, DG ;
IWASAKI, H ;
NAKAMURA, H ;
SHINAGAWA, H ;
MORIKAWA, K .
CELL, 1994, 78 (06) :1063-1072
[4]   ELECTRON STAINS .2. ELECTRON MICROSCOPIC STUDIES ON VISIBILITY OF STAINED DNA MOLECULES [J].
BEER, M ;
ZOBEL, CR .
JOURNAL OF MOLECULAR BIOLOGY, 1961, 3 (06) :717-&
[5]   SYNTHESIS FROM DNA OF A MOLECULE WITH THE CONNECTIVITY OF A CUBE [J].
CHEN, JH ;
SEEMAN, NC .
NATURE, 1991, 350 (6319) :631-633
[6]   MRC image processing programs [J].
Crowther, RA ;
Henderson, R ;
Smith, JM .
JOURNAL OF STRUCTURAL BIOLOGY, 1996, 116 (01) :9-16
[7]   The Holliday junction in an inverted repeat DNA sequence: Sequence effects on the structure of four-way junctions [J].
Eichman, BF ;
Vargason, JM ;
Mooers, BHM ;
Ho, PS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (08) :3971-3976
[8]  
Feng L., 2003, ANGEW CHEM, V115, P4478, DOI DOI 10.1002/ANGE.200351818
[9]   A two-state DNA lattice switched by DNA nanoactuator [J].
Feng, LP ;
Park, SH ;
Reif, JH ;
Yan, H .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2003, 42 (36) :4342-4346
[10]   SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields [J].
Frank, J ;
Radermacher, M ;
Penczek, P ;
Zhu, J ;
Li, YH ;
Ladjadj, M ;
Leith, A .
JOURNAL OF STRUCTURAL BIOLOGY, 1996, 116 (01) :190-199