Genetics of inflammatory bowel disease: beyond NOD2

被引:124
作者
Mirkov, Masa Umicevic [1 ]
Verstockt, Bram [2 ,3 ,4 ]
Cleynen, Isabelle [5 ]
机构
[1] Wellcome Trust Sanger Inst, Hinxton, Cambs, England
[2] Univ Cambridge, Sch Clin Med, Dept Med, Cambridge Biomed Campus, Cambridge, England
[3] Univ Cambridge, Sch Clin Med, Cambridge Inst Med Res, Cambridge Biomed Campus, Cambridge, England
[4] Katholieke Univ Leuven, Dept Clin & Expt Med, Translat Res Gastrointestinal Disorders TARGID, Leuven, Belgium
[5] Katholieke Univ Leuven, Dept Human Genet, Leuven, Belgium
基金
英国惠康基金;
关键词
GENOME-WIDE ASSOCIATION; COLITIS-RISK LOCI; CROHNS-DISEASE; CONFER SUSCEPTIBILITY; SKIN-LESIONS; VARIANTS; COMMON; MANIFESTATIONS; GENOTYPE; THERAPY;
D O I
10.1016/S2468-1253(16)30111-X
中图分类号
R57 [消化系及腹部疾病];
学科分类号
摘要
The study of the genetic underpinnings of inflammatory bowel disease has made great progress since the identification of NOD2 as a major susceptibility gene. Novel genotyping and sequencing technologies have led to the discovery of 242 common susceptibility loci, 45 of which have been fine-mapped to statistically conclusive causal variants; 50 genes associated with very-early-onset inflammatory disease have been identified. The evolving genetic architecture of inflammatory bowel disease has deepened our understanding of its pathogenesis through identification of major disease associated pathways-knowledge that has the potential to indicate novel drug targets or markers for personalised medicine. However, many causal variants have yet to be identified, and a large proportion of missing heritability still needs to be accounted for. In addition, the medical and scientific communities are probably not yet fully harnessing the power of these genetic discoveries.
引用
收藏
页码:224 / 234
页数:11
相关论文
共 95 条
[51]   Novel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4 [J].
Libioulle, Cecile ;
Louis, Edouard ;
Hansoul, Sarah ;
Sandor, Cynthia ;
Farnir, Frederic ;
Franchimont, Denis ;
Vermeire, Severine ;
Dewit, Olivier ;
de Vos, Martine ;
Dixon, Anna ;
Demarche, Bruno ;
Gut, Ivo ;
Heath, Simon ;
Foglio, Mario ;
Liang, Liming ;
Laukens, Debby ;
Mni, Myriam ;
Zelenika, Diana ;
Van Gossum, Andre ;
Rutgeerts, Paul ;
Belaiche, Jacques ;
Lathrop, Mark ;
Georges, Michel .
PLOS GENETICS, 2007, 3 (04) :0538-0543
[52]   Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations [J].
Liu, Jimmy Z. ;
van Sommeren, Suzanne ;
Huang, Hailiang ;
Ng, Siew C. ;
Alberts, Rudi ;
Takahashi, Atsushi ;
Ripke, Stephan ;
Lee, James C. ;
Jostins, Luke ;
Shah, Tejas ;
Abedian, Shifteh ;
Cheon, Jae Hee ;
Cho, Judy ;
Daryani, Naser E. ;
Franke, Lude ;
Fuyuno, Yuta ;
Hart, Ailsa ;
Juyal, Ramesh C. ;
Juyal, Garima ;
Kim, Won Ho ;
Morris, Andrew P. ;
Poustchi, Hossein ;
Newman, William G. ;
Midha, Vandana ;
Orchard, Timothy R. ;
Vahedi, Homayon ;
Sood, Ajit ;
Sung, Joseph J. Y. ;
Malekzadeh, Reza ;
Westra, Harm-Jan ;
Yamazaki, Keiko ;
Yang, Suk-Kyun ;
Barrett, Jeffrey C. ;
Franke, Andre ;
Alizadeh, Behrooz Z. ;
Parkes, Miles ;
Thelma, B. K. ;
Daly, Mark J. ;
Kubo, Michiaki ;
Anderson, Carl A. ;
Weersma, Rinse K. .
NATURE GENETICS, 2015, 47 (09) :979-+
[53]   Genetic studies of Crohn's disease: Past, present and future [J].
Liu, Jimmy Z. ;
Anderson, Carl A. .
BEST PRACTICE & RESEARCH CLINICAL GASTROENTEROLOGY, 2014, 28 (03) :373-386
[54]   Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis [J].
Liu, Jimmy Z. ;
Hov, Johannes Roksund ;
Folseraas, Trine ;
Ellinghaus, Eva ;
Rushbrook, Simon M. ;
Doncheva, Nadezhda T. ;
Andreassen, Ole A. ;
Weersma, Rinse K. ;
Weismueller, Tobias J. ;
Eksteen, Bertus ;
Invernizzi, Pietro ;
Hirschfield, Gideon M. ;
Gotthardt, Daniel Nils ;
Pares, Albert ;
Ellinghaus, David ;
Shah, Tejas ;
Juran, Brian D. ;
Milkiewicz, Piotr ;
Rust, Christian ;
Schramm, Christoph ;
Mueller, Tobias ;
Srivastava, Brijesh ;
Dalekos, Georgios ;
Noethen, Markus M. ;
Herms, Stefan ;
Winkelmann, Juliane ;
Mitrovic, Mitja ;
Braun, Felix ;
Ponsioen, Cyriel Y. ;
Croucher, Peter J. P. ;
Sterneck, Martina ;
Teufel, Andreas ;
Mason, Andrew L. ;
Saarela, Janna ;
Leppa, Virpi ;
Dorfman, Ruslan ;
Alvaro, Domenico ;
Floreani, Annarosa ;
Onengut-Gumuscu, Suna ;
Rich, Stephen S. ;
Thompson, Wesley K. ;
Schork, Andrew J. ;
Naess, Sigrid ;
Thomsen, Ingo ;
Mayr, Gabriele ;
Koenig, Inke R. ;
Hveem, Kristian ;
Cleynen, Isabelle ;
Gutierrez-Achury, Javier ;
Ricano-Ponce, Isis .
NATURE GENETICS, 2013, 45 (06) :670-+
[55]   Exploring the genetic architecture of inflammatory bowel disease by whole-genome sequencing identifies association at ADCY7 [J].
Luo, Yang ;
de lange, Katrina M. ;
Jostins, Luke ;
Moutsianas, Loukas ;
Randall, Joshua ;
Kennedy, Nicholas A. ;
Lamb, Christopher A. ;
McCarthy, Shane ;
Ahmad, Tariq ;
Edwards, Cathryn ;
Serra, Eva Goncalves ;
Hart, Ailsa ;
Hawkey, Chris ;
Mansfield, John C. ;
Mowat, Craig ;
Newman, William G. ;
Nichols, Sam ;
Pollard, Martin ;
Satsangi, Jack ;
Simmons, Alison ;
Tremelling, Mark ;
Uhlig, Holm ;
Wilson, David C. ;
Lee, James C. ;
Prescott, Natalie J. ;
Lees, Charlie W. ;
Mathew, Christopher G. ;
Parkes, Miles ;
Barrett, Jeffrey C. ;
Anderson, Carl A. .
NATURE GENETICS, 2017, 49 (02) :186-192
[56]   A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis [J].
Machiels, Kathleen ;
Joossens, Marie ;
Sabino, Joao ;
De Preter, Vicky ;
Arijs, Ingrid ;
Eeckhaut, Venessa ;
Ballet, Vera ;
Claes, Karolien ;
Van Immerseel, Filip ;
Verbeke, Kristin ;
Ferrante, Marc ;
Verhaegen, Jan ;
Rutgeerts, Paul ;
Vermeire, Severine .
GUT, 2014, 63 (08) :1275-1283
[57]   Nod2 mutation in Crohn's disease potentiates NF-κB activity and IL-10 processing [J].
Maeda, S ;
Hsu, LC ;
Liu, HJ ;
Bankston, LA ;
Iimura, M ;
Kagnoff, MF ;
Eckmann, L ;
Karin, M .
SCIENCE, 2005, 307 (5710) :734-738
[58]   Genetics of inflammatory bowel disease: progress and prospects [J].
Mathew, CG ;
Lewis, CM .
HUMAN MOLECULAR GENETICS, 2004, 13 :R161-R168
[59]   Systematic Localization of Common Disease-Associated Variation in Regulatory DNA [J].
Maurano, Matthew T. ;
Humbert, Richard ;
Rynes, Eric ;
Thurman, Robert E. ;
Haugen, Eric ;
Wang, Hao ;
Reynolds, Alex P. ;
Sandstrom, Richard ;
Qu, Hongzhu ;
Brody, Jennifer ;
Shafer, Anthony ;
Neri, Fidencio ;
Lee, Kristen ;
Kutyavin, Tanya ;
Stehling-Sun, Sandra ;
Johnson, Audra K. ;
Canfield, Theresa K. ;
Giste, Erika ;
Diegel, Morgan ;
Bates, Daniel ;
Hansen, R. Scott ;
Neph, Shane ;
Sabo, Peter J. ;
Heimfeld, Shelly ;
Raubitschek, Antony ;
Ziegler, Steven ;
Cotsapas, Chris ;
Sotoodehnia, Nona ;
Glass, Ian ;
Sunyaev, Shamil R. ;
Kaul, Rajinder ;
Stamatoyannopoulos, John A. .
SCIENCE, 2012, 337 (6099) :1190-1195
[60]   Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease [J].
McGovern, Dermot P. B. ;
Jones, Michelle R. ;
Taylor, Kent D. ;
Marciante, Kristin ;
Yan, Xiaofei ;
Dubinsky, Marla ;
Ippoliti, Andy ;
Vasiliauskas, Eric ;
Berel, Dror ;
Derkowski, Carrie ;
Dutridge, Deb ;
Fleshner, Phil ;
Shih, David Q. ;
Melmed, Gil ;
Mengesha, Emebet ;
King, Lily ;
Pressman, Sheila ;
Haritunians, Talin ;
Guo, Xiuqing ;
Targan, Stephan R. ;
Rotter, Jerome I. .
HUMAN MOLECULAR GENETICS, 2010, 19 (17) :3468-3476