Comparative QSRR Modeling of Nitrobenzene Derivatives Based on Original Molecular Descriptors and Multivariate Image Analysis Descriptors

被引:13
作者
Garkani-Nejad, Zahra [1 ]
Ahmadvand, Mohammad [1 ]
机构
[1] Vali e Asr Univ, Dept Chem, Fac Sci, Rafsanjan, Iran
关键词
Quantitative structure-retention relationship (QSRR); Multivariate image analysis (MIA); Principal component regression (PCR); Artificial neural network (ANN); STRUCTURE-RETENTION RELATIONSHIP; ARTIFICIAL NEURAL-NETWORKS; PRINCIPAL COMPONENT REGRESSION; LIQUID-CHROMATOGRAPHY; GRADIENT RETENTION; PREDICTION; SELECTION; TIMES; VARIETY; INDEXES;
D O I
10.1007/s10337-011-1969-7
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A comparative quantitative structure-retention relationship (QSRR) study has been carried out to predict the retention time of nitrobenzene derivatives using original molecular descriptors and multivariate image analysis (MIA) descriptors. First, original molecular descriptors were generated from molecular structures and applied to construct QSRR models using multiple linear regression (MLR), partial least squares (PLS), and artificial neural network (ANN) modeling methods. Then, multivariate image analysis (MIA) descriptors were generated from pixels of images and analyzed using correlation ranking-principal component regression (CR-PCR) and correlation ranking-principal component-artificial neural network (CR-PC-ANN) methods. In this paper, the CR-PC-ANN method presented better results than the other methods for predicting the retention time of the studied compounds. Coefficients of determination (R (2)) using the CR-PC-ANN method for the training, test, and validation sets were 0.989, 0.999, and 0.999, respectively.
引用
收藏
页码:733 / 742
页数:10
相关论文
共 47 条
[41]  
Todeschini R., 2000, Handbook of Molecular Descriptor
[42]  
Todeschini R, 2003, DRAGON software version 3.0
[43]   Structure-activity relationship studies of carcinogenic activity of polycyclic aromatic hydrocarbons using calculated molecular descriptors with principal component analysis and neural network methods [J].
Vendrame, R ;
Braga, RS ;
Takahata, Y ;
Galvao, DS .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1999, 39 (06) :1094-1104
[44]   Comparison of prediction- and correlation-based methods to select the best subset of principal components for principal component regression and detect outlying objects [J].
Verdu-Andres, J ;
Massart, DL .
APPLIED SPECTROSCOPY, 1998, 52 (11) :1425-1434
[45]  
WISE BM, 2000, TRICAP 2000 3 WAY ME
[46]   Evaluation of principal component selection methods to form a global prediction model by principal component regression [J].
Xie, YL ;
Kalivas, JH .
ANALYTICA CHIMICA ACTA, 1997, 348 (1-3) :19-27
[47]  
Zupan J., 1999, Neural Networks in Chemistry and Drug Design